File	function	statements	missing	excluded	branches	partial	coverage
openhcs/__init__.py	_utf8_file_handler_init	1	0	0	0	0	100.0%
openhcs/__init__.py	_ensure_basic_logging	3	0	0	2	1	80.0%
openhcs/__init__.py	(no function)	15	4	0	6	1	57.1%
openhcs/components/__init__.py	(no function)	2	0	0	0	0	100.0%
openhcs/components/framework.py	ComponentConfiguration.__post_init__	8	3	0	8	3	62.5%
openhcs/components/framework.py	ComponentConfiguration.validate_combination	2	1	0	2	1	50.0%
openhcs/components/framework.py	ComponentConfiguration.get_remaining_components	1	0	0	0	0	100.0%
openhcs/components/framework.py	ComponentConfiguration.get_available_variable_components	1	1	0	0	0	0.0%
openhcs/components/framework.py	ComponentConfiguration.get_available_group_by_components	4	4	0	2	0	0.0%
openhcs/components/framework.py	ComponentConfigurationFactory.create_configuration	11	6	0	8	2	36.8%
openhcs/components/framework.py	ComponentConfigurationFactory.create_openhcs_default_configuration	8	0	0	0	0	100.0%
openhcs/components/framework.py	(no function)	20	0	0	0	0	100.0%
openhcs/config_framework/__init__.py	(no function)	11	0	0	0	0	100.0%
openhcs/config_framework/cache_warming.py	_extract_all_dataclass_types	20	20	0	18	0	0.0%
openhcs/config_framework/cache_warming.py	prewarm_callable_analysis_cache	4	0	0	2	0	100.0%
openhcs/config_framework/cache_warming.py	prewarm_config_analysis_cache	20	20	0	10	0	0.0%
openhcs/config_framework/cache_warming.py	(no function)	10	0	0	0	0	100.0%
openhcs/config_framework/config.py	set_base_config_type	1	0	0	0	0	100.0%
openhcs/config_framework/config.py	get_base_config_type	3	1	0	2	1	60.0%
openhcs/config_framework/config.py	(no function)	4	0	0	0	0	100.0%
openhcs/config_framework/context_manager.py	_merge_nested_dataclass	19	6	0	14	3	66.7%
openhcs/config_framework/context_manager.py	config_context	47	16	0	26	7	63.0%
openhcs/config_framework/context_manager.py	extract_from_function_signature	11	11	0	4	0	0.0%
openhcs/config_framework/context_manager.py	extract_from_dataclass_fields	9	9	0	6	0	0.0%
openhcs/config_framework/context_manager.py	extract_from_object_attributes	12	12	0	6	0	0.0%
openhcs/config_framework/context_manager.py	merge_configs	12	12	0	4	0	0.0%
openhcs/config_framework/context_manager.py	get_base_global_config	11	4	0	2	1	61.5%
openhcs/config_framework/context_manager.py	get_current_temp_global	1	0	0	0	0	100.0%
openhcs/config_framework/context_manager.py	set_current_temp_global	1	1	0	0	0	0.0%
openhcs/config_framework/context_manager.py	clear_current_temp_global	4	4	0	0	0	0.0%
openhcs/config_framework/context_manager.py	get_context_info	4	4	0	2	0	0.0%
openhcs/config_framework/context_manager.py	extract_all_configs_from_context	4	4	0	2	0	0.0%
openhcs/config_framework/context_manager.py	extract_all_configs	23	5	0	12	4	74.3%
openhcs/config_framework/context_manager.py	_unwrap_optional_type	6	4	0	6	1	25.0%
openhcs/config_framework/context_manager.py	_extract_from_object_attributes_typed	13	13	0	6	0	0.0%
openhcs/config_framework/context_manager.py	_is_compatible_config_type	16	10	0	10	1	34.6%
openhcs/config_framework/context_manager.py	(no function)	26	0	0	0	0	100.0%
openhcs/config_framework/dual_axis_resolver.py	_has_concrete_field_override	5	5	0	2	0	0.0%
openhcs/config_framework/dual_axis_resolver.py	resolve_field_inheritance_old	95	95	0	68	0	0.0%
openhcs/config_framework/dual_axis_resolver.py	_is_related_config_type	9	9	0	6	0	0.0%
openhcs/config_framework/dual_axis_resolver.py	resolve_field_inheritance	40	14	0	30	3	67.1%
openhcs/config_framework/dual_axis_resolver.py	_has_concrete_field_override	12	2	0	6	0	88.9%
openhcs/config_framework/dual_axis_resolver.py	_find_blocking_class_in_mro	19	19	0	12	0	0.0%
openhcs/config_framework/dual_axis_resolver.py	(no function)	10	0	0	0	0	100.0%
openhcs/config_framework/global_config.py	set_current_global_config	8	0	0	2	0	100.0%
openhcs/config_framework/global_config.py	set_global_config_for_editing	1	0	0	0	0	100.0%
openhcs/config_framework/global_config.py	get_current_global_config	2	0	0	0	0	100.0%
openhcs/config_framework/global_config.py	(no function)	6	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	register_lazy_type_mapping	1	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	get_base_type_for_lazy	1	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	_get_raw_field_value	4	4	0	0	0	0.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_resolver	4	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_resolver._resolve_field_value	7	7	0	0	0	0.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_getattribute	6	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_getattribute._find_mro_concrete_value	1	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_getattribute._try_global_context_value	11	11	0	4	0	0.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_getattribute.__getattribute__	30	1	0	14	4	88.6%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_to_base_config	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_to_base_config.to_base_config	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyMethodBindings.create_class_methods	1	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory._introspect_dataclass_fields	26	3	0	14	3	85.0%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory._create_lazy_dataclass_unified	22	4	0	8	3	76.7%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory._create_lazy_dataclass_unified.__init_with_tracking__	7	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory._create_lazy_dataclass_unified.__init_with_tracking__._camel_to_snake_local	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory.make_lazy_simple	3	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	LazyDataclassFactory.make_lazy_simple.simple_provider	1	1	0	0	0	0.0%
openhcs/config_framework/lazy_factory.py	ensure_global_config_context	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	ContextProviderMeta.__new__	1	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	_detect_context_type	6	0	0	6	0	100.0%
openhcs/config_framework/lazy_factory.py	resolve_lazy_configurations_for_serialization	62	2	0	30	3	94.6%
openhcs/config_framework/lazy_factory.py	create_dataclass_for_editing	7	7	0	4	0	0.0%
openhcs/config_framework/lazy_factory.py	rebuild_lazy_config_with_new_global_reference	8	8	0	4	0	0.0%
openhcs/config_framework/lazy_factory.py	rebuild_lazy_config_with_new_global_reference.process_field_value	21	21	0	10	0	0.0%
openhcs/config_framework/lazy_factory.py	InheritAsNoneMeta.__new__	26	26	0	22	0	0.0%
openhcs/config_framework/lazy_factory.py	InheritAsNoneMeta.__reduce__	9	9	0	8	0	0.0%
openhcs/config_framework/lazy_factory.py	create_global_default_decorator	5	0	0	2	1	85.7%
openhcs/config_framework/lazy_factory.py	create_global_default_decorator.global_default_decorator	4	0	0	2	0	100.0%
openhcs/config_framework/lazy_factory.py	create_global_default_decorator.global_default_decorator.decorator	38	1	0	30	5	91.2%
openhcs/config_framework/lazy_factory.py	_fix_dataclass_field_defaults_post_processing	10	0	0	4	1	92.9%
openhcs/config_framework/lazy_factory.py	_fix_dataclass_field_defaults_post_processing.custom_init	4	0	0	4	0	100.0%
openhcs/config_framework/lazy_factory.py	_inject_all_pending_fields	5	0	0	4	1	88.9%
openhcs/config_framework/lazy_factory.py	_camel_to_snake	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	_inject_multiple_fields_into_dataclass	17	1	0	4	1	90.5%
openhcs/config_framework/lazy_factory.py	_inject_multiple_fields_into_dataclass.create_field_definition	8	2	0	2	1	70.0%
openhcs/config_framework/lazy_factory.py	_inject_multiple_fields_into_dataclass._register_lazy_class	2	0	0	0	0	100.0%
openhcs/config_framework/lazy_factory.py	auto_create_decorator	7	1	0	2	1	77.8%
openhcs/config_framework/lazy_factory.py	(no function)	70	1	0	0	0	98.6%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService.has_lazy_resolution	6	6	0	4	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService.get_lazy_resolved_placeholder	15	15	0	4	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService._get_lazy_type_for_base	5	5	0	4	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService._get_class_default_placeholder	7	7	0	2	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService._get_class_default_value	4	4	0	0	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService._format_placeholder_text	18	18	0	12	0	0.0%
openhcs/config_framework/placeholder.py	LazyDefaultPlaceholderService._format_nested_dataclass_summary	25	25	0	12	0	0.0%
openhcs/config_framework/placeholder.py	get_lazy_resolved_placeholder	1	1	0	0	0	0.0%
openhcs/config_framework/placeholder.py	(no function)	22	0	0	0	0	100.0%
openhcs/constants/__init__.py	(no function)	4	0	0	0	0	100.0%
openhcs/constants/constants.py	get_openhcs_config	2	0	0	0	0	100.0%
openhcs/constants/constants.py	_get_component_enum_cache_manager	11	3	0	2	1	69.2%
openhcs/constants/constants.py	_get_component_enum_cache_manager.get_version	5	2	0	0	0	60.0%
openhcs/constants/constants.py	_get_component_enum_cache_manager.serialize_component_enums	1	0	0	0	0	100.0%
openhcs/constants/constants.py	_get_component_enum_cache_manager.deserialize_component_enums	1	1	0	0	0	0.0%
openhcs/constants/constants.py	_add_groupby_methods	6	0	0	0	0	100.0%
openhcs/constants/constants.py	_create_enums	52	18	0	6	3	63.8%
openhcs/constants/constants.py	_create_streaming_components	12	12	0	0	0	0.0%
openhcs/constants/constants.py	__getattr__	26	11	0	8	2	55.9%
openhcs/constants/constants.py	get_default_variable_components	2	0	0	0	0	100.0%
openhcs/constants/constants.py	get_default_group_by	3	0	0	0	0	100.0%
openhcs/constants/constants.py	get_multiprocessing_axis	2	0	0	0	0	100.0%
openhcs/constants/constants.py	MemoryType.converter	2	2	0	0	0	0.0%
openhcs/constants/constants.py	_add_conversion_methods	4	0	0	2	0	100.0%
openhcs/constants/constants.py	_add_conversion_methods.make_method	2	0	0	0	0	100.0%
openhcs/constants/constants.py	_add_conversion_methods.make_method.method	1	1	0	0	0	0.0%
openhcs/constants/constants.py	(no function)	109	0	0	0	0	100.0%
openhcs/constants/input_source.py	(no function)	6	0	0	0	0	100.0%
openhcs/constants/streaming.py	(no function)	12	12	0	0	0	0.0%
openhcs/core/__init__.py	(no function)	3	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	_get_cache_manager	4	0	0	2	0	100.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.__init__	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict._ensure_discovered	2	0	0	2	1	75.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.__getitem__	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.__contains__	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.__iter__	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.__len__	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.keys	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.values	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.items	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	SecondaryRegistryDict.get	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.__init__	6	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict._set_config	10	3	0	2	1	66.7%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict._set_config.get_version	5	2	0	0	0	60.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict._discover	30	7	0	10	3	75.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.__getitem__	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.__contains__	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.__iter__	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.__len__	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.keys	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.values	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.items	2	2	0	0	0	0.0%
openhcs/core/auto_register_meta.py	LazyDiscoveryDict.get	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	AutoRegisterMeta.__new__	65	11	0	46	14	77.5%
openhcs/core/auto_register_meta.py	AutoRegisterMeta._get_registration_key	6	3	0	4	1	40.0%
openhcs/core/auto_register_meta.py	AutoRegisterMeta._handle_missing_key	5	5	0	4	0	0.0%
openhcs/core/auto_register_meta.py	AutoRegisterMeta._auto_configure_registry	35	6	0	14	3	81.6%
openhcs/core/auto_register_meta.py	AutoRegisterMeta._register_class	2	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	AutoRegisterMeta._register_secondary	12	8	0	8	1	35.0%
openhcs/core/auto_register_meta.py	make_suffix_extractor	3	0	0	0	0	100.0%
openhcs/core/auto_register_meta.py	make_suffix_extractor.extractor	3	3	0	2	0	0.0%
openhcs/core/auto_register_meta.py	(no function)	66	0	0	0	0	100.0%
openhcs/core/components/__init__.py	(no function)	5	0	0	0	0	100.0%
openhcs/core/components/metaprogramming.py	MethodSignature.__init__	3	3	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	MethodSignature.__repr__	0	0	3	0	0	100.0%
openhcs/core/components/metaprogramming.py	ComponentMethodRegistry.__init__	1	1	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentMethodRegistry.register_method	4	4	0	2	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentMethodRegistry.get_methods	1	1	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentMethodRegistry.has_method	1	1	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	DynamicInterfaceMeta.__new__	11	11	0	6	0	0.0%
openhcs/core/components/metaprogramming.py	DynamicInterfaceMeta._generate_methods	9	9	1	4	0	0.0%
openhcs/core/components/metaprogramming.py	DynamicInterfaceMeta._generate_methods.create_abstract_method	3	3	1	0	0	0.0%
openhcs/core/components/metaprogramming.py	DynamicInterfaceMeta._generate_methods.create_abstract_method.abstract_method	0	0	2	0	0	100.0%
openhcs/core/components/metaprogramming.py	ComponentProcessorInterface.__init__	2	2	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentProcessorInterface._validate_implementation	8	8	1	4	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentProcessorInterface.get_available_methods	1	1	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentProcessorInterface.has_method_for_component	2	2	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	ComponentProcessorInterface.call_component_method	5	5	0	2	0	0.0%
openhcs/core/components/metaprogramming.py	InterfaceGenerator.__init__	1	1	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	InterfaceGenerator.create_interface	12	12	0	6	0	0.0%
openhcs/core/components/metaprogramming.py	InterfaceGenerator.get_cached_interface	4	4	0	4	0	0.0%
openhcs/core/components/metaprogramming.py	InterfaceGenerator.clear_cache	2	2	0	0	0	0.0%
openhcs/core/components/metaprogramming.py	(no function)	30	30	1	0	0	0.0%
openhcs/core/components/multiprocessing.py	MultiprocessingCoordinator.__init__	3	3	0	0	0	0.0%
openhcs/core/components/multiprocessing.py	MultiprocessingCoordinator.create_tasks	11	11	0	4	0	0.0%
openhcs/core/components/multiprocessing.py	MultiprocessingCoordinator.execute_tasks	22	22	0	6	0	0.0%
openhcs/core/components/multiprocessing.py	(no function)	15	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	ParserMethodRegistry.__init__	2	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	ParserMethodRegistry.register_parser_interface	9	9	0	2	0	0.0%
openhcs/core/components/parser_metaprogramming.py	ParserMethodRegistry.get_methods	1	1	0	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	ParserMethodRegistry.get_component_enum	1	1	0	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta.__new__	10	10	0	4	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods	10	10	4	2	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_parse_filename_method	1	1	1	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_parse_filename_method.parse_filename	0	0	6	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_construct_filename_method	1	1	1	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_construct_filename_method.construct_filename	0	0	11	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_validate_method	3	3	1	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_validate_method.validate_component	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_extract_method	3	3	1	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	DynamicParserMeta._generate_parser_methods.create_extract_method.extract_component	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.__init__	4	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser._generate_dynamic_methods	6	0	0	2	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser._create_generic_validator	3	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser._create_generic_validator.validate_component	7	7	0	6	0	0.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser._create_generic_extractor	3	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser._create_generic_extractor.extract_component	4	4	0	2	0	0.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.can_parse	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.extract_component_coordinates	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.parse_filename	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.construct_filename	0	0	2	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.__getstate__	14	14	0	6	0	0.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.__setstate__	4	0	0	2	1	83.3%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.get_component_names	1	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.validate_component_by_name	3	3	0	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.extract_component_by_name	3	3	0	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	GenericFilenameParser.validate_component_dict	13	13	0	8	0	0.0%
openhcs/core/components/parser_metaprogramming.py	ParserInterfaceGenerator.__init__	1	0	0	0	0	100.0%
openhcs/core/components/parser_metaprogramming.py	ParserInterfaceGenerator.create_parser_interface	12	12	0	6	0	0.0%
openhcs/core/components/parser_metaprogramming.py	ParserInterfaceGenerator.get_cached_interface	4	4	0	4	0	0.0%
openhcs/core/components/parser_metaprogramming.py	ParserInterfaceGenerator.clear_cache	2	2	0	0	0	0.0%
openhcs/core/components/parser_metaprogramming.py	(no function)	33	0	9	0	0	100.0%
openhcs/core/components/validation.py	convert_enum_by_value	5	1	0	4	1	77.8%
openhcs/core/components/validation.py	GenericValidator.__init__	2	0	0	0	0	100.0%
openhcs/core/components/validation.py	GenericValidator.validate_step	14	5	0	8	3	63.6%
openhcs/core/components/validation.py	GenericValidator.validate_dict_pattern_keys	18	10	0	4	1	40.9%
openhcs/core/components/validation.py	GenericValidator.validate_component_combination_constraint	5	5	0	0	0	0.0%
openhcs/core/components/validation.py	(no function)	19	0	0	0	0	100.0%
openhcs/core/config.py	ZarrCompressor.create_compressor	12	6	0	10	3	40.9%
openhcs/core/config.py	StreamingConfig.backend	0	0	2	0	0	100.0%
openhcs/core/config.py	StreamingConfig.viewer_type	0	0	2	0	0	100.0%
openhcs/core/config.py	StreamingConfig.step_plan_output_key	0	0	2	0	0	100.0%
openhcs/core/config.py	StreamingConfig.get_streaming_kwargs	0	0	2	0	0	100.0%
openhcs/core/config.py	StreamingConfig.create_visualizer	0	0	2	0	0	100.0%
openhcs/core/config.py	(no function)	199	0	13	0	0	100.0%
openhcs/core/config_cache.py	CacheExecutionStrategy.execute_load	0	0	2	0	0	100.0%
openhcs/core/config_cache.py	CacheExecutionStrategy.execute_save	0	0	2	0	0	100.0%
openhcs/core/config_cache.py	AsyncExecutionStrategy.execute_load	3	3	0	0	0	0.0%
openhcs/core/config_cache.py	AsyncExecutionStrategy.execute_save	3	3	0	0	0	0.0%
openhcs/core/config_cache.py	QtExecutionStrategy.__init__	1	1	0	0	0	0.0%
openhcs/core/config_cache.py	QtExecutionStrategy.execute_load	1	1	0	0	0	0.0%
openhcs/core/config_cache.py	QtExecutionStrategy.execute_save	1	1	0	0	0	0.0%
openhcs/core/config_cache.py	_migrate_dataclass	9	9	0	6	0	0.0%
openhcs/core/config_cache.py	_sync_load_config	20	20	0	4	0	0.0%
openhcs/core/config_cache.py	_sync_save_config	9	9	0	0	0	0.0%
openhcs/core/config_cache.py	UnifiedGlobalConfigCache.__init__	6	6	0	2	0	0.0%
openhcs/core/config_cache.py	UnifiedGlobalConfigCache.load_cached_config	1	1	0	0	0	0.0%
openhcs/core/config_cache.py	UnifiedGlobalConfigCache.save_config_to_cache	1	1	0	0	0	0.0%
openhcs/core/config_cache.py	UnifiedGlobalConfigCache.clear_cache	8	8	0	2	0	0.0%
openhcs/core/config_cache.py	get_global_config_cache	3	3	0	2	0	0.0%
openhcs/core/config_cache.py	load_cached_global_config	16	16	0	2	0	0.0%
openhcs/core/config_cache.py	load_cached_global_config_sync	14	14	0	2	0	0.0%
openhcs/core/config_cache.py	(no function)	28	28	4	0	0	0.0%
openhcs/core/context/__init__.py	(no function)	2	0	0	0	0	100.0%
openhcs/core/context/processing_context.py	ProcessingContext.__init__	10	0	0	2	0	100.0%
openhcs/core/context/processing_context.py	ProcessingContext.__setattr__	3	1	0	2	1	60.0%
openhcs/core/context/processing_context.py	ProcessingContext.inject_plan	3	3	0	2	0	0.0%
openhcs/core/context/processing_context.py	ProcessingContext.freeze	7	3	0	6	3	53.8%
openhcs/core/context/processing_context.py	ProcessingContext.is_frozen	1	0	0	0	0	100.0%
openhcs/core/context/processing_context.py	ProcessingContext.get_vfs_config	3	1	0	2	1	60.0%
openhcs/core/context/processing_context.py	ProcessingContext.get_path_planning_config	3	3	0	2	0	0.0%
openhcs/core/context/processing_context.py	ProcessingContext.get_num_workers	3	3	0	2	0	0.0%
openhcs/core/context/processing_context.py	(no function)	11	0	0	0	0	100.0%
openhcs/core/lazy_gpu_imports.py	_check_cuda_available	1	1	0	0	0	0.0%
openhcs/core/lazy_gpu_imports.py	_check_jax_gpu	1	1	0	0	0	0.0%
openhcs/core/lazy_gpu_imports.py	_check_tf_gpu	2	2	0	0	0	0.0%
openhcs/core/lazy_gpu_imports.py	_LazyGPUModule.__init__	8	0	0	0	0	100.0%
openhcs/core/lazy_gpu_imports.py	_LazyGPUModule.is_installed	1	1	0	0	0	0.0%
openhcs/core/lazy_gpu_imports.py	_LazyGPUModule._ensure_imported	13	6	0	10	2	47.8%
openhcs/core/lazy_gpu_imports.py	_LazyGPUModule.__getattr__	4	1	0	2	1	66.7%
openhcs/core/lazy_gpu_imports.py	_LazyGPUModule.__bool__	2	0	0	0	0	100.0%
openhcs/core/lazy_gpu_imports.py	check_installed_gpu_libraries	1	1	0	0	0	0.0%
openhcs/core/lazy_gpu_imports.py	check_gpu_capability	11	5	0	8	3	47.4%
openhcs/core/lazy_gpu_imports.py	(no function)	21	0	0	2	0	100.0%
openhcs/core/lazy_placeholder.py	(no function)	1	0	0	0	0	100.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService.has_lazy_resolution	6	6	0	4	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService.get_lazy_resolved_placeholder	17	17	0	4	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService._get_lazy_type_for_base	5	5	0	4	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService._get_class_default_placeholder	7	7	0	2	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService._get_class_default_value	4	4	0	0	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService._format_placeholder_text	18	18	0	12	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	LazyDefaultPlaceholderService._format_nested_dataclass_summary	25	25	0	12	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	get_lazy_resolved_placeholder	1	1	0	0	0	0.0%
openhcs/core/lazy_placeholder_simplified.py	(no function)	22	0	0	0	0	100.0%
openhcs/core/log_utils.py	get_current_log_file_path	15	15	0	8	0	0.0%
openhcs/core/log_utils.py	LogFileInfo.__post_init__	8	8	0	8	0	0.0%
openhcs/core/log_utils.py	discover_logs	28	28	0	22	0	0.0%
openhcs/core/log_utils.py	classify_log_file	31	31	0	18	0	0.0%
openhcs/core/log_utils.py	is_relevant_log_file	9	9	0	6	0	0.0%
openhcs/core/log_utils.py	is_openhcs_log_file	5	5	0	2	0	0.0%
openhcs/core/log_utils.py	infer_base_log_path	5	5	0	2	0	0.0%
openhcs/core/log_utils.py	(no function)	19	19	0	0	0	0.0%
openhcs/core/memory/__init__.py	(no function)	10	0	0	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	MemoryTypeConverter.to_numpy	0	0	2	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	MemoryTypeConverter.from_numpy	0	0	2	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	MemoryTypeConverter.from_dlpack	0	0	2	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	MemoryTypeConverter.move_to_device	0	0	2	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	_add_converter_methods	4	0	0	2	0	100.0%
openhcs/core/memory/conversion_helpers.py	_add_converter_methods.make_method	2	0	0	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	_add_converter_methods.make_method.method	10	10	0	2	0	0.0%
openhcs/core/memory/conversion_helpers.py	_make_not_implemented	4	0	0	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	_make_not_implemented.not_impl	0	0	1	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	_make_lambda_with_name	6	0	0	0	0	100.0%
openhcs/core/memory/conversion_helpers.py	_validate_converters	10	2	0	10	2	80.0%
openhcs/core/memory/conversion_helpers.py	(no function)	17	0	8	0	0	100.0%
openhcs/core/memory/converters.py	convert_memory	4	0	0	0	0	100.0%
openhcs/core/memory/converters.py	detect_memory_type	8	6	0	6	1	21.4%
openhcs/core/memory/converters.py	(no function)	7	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	DtypeConversion.numpy_dtype	2	2	0	0	0	0.0%
openhcs/core/memory/decorators.py	_create_lazy_getter	2	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	_create_lazy_getter.getter	5	5	0	4	0	0.0%
openhcs/core/memory/decorators.py	ThreadGPUContext.__init__	4	4	0	0	0	0.0%
openhcs/core/memory/decorators.py	ThreadGPUContext.get_cupy_stream	6	6	0	4	0	0.0%
openhcs/core/memory/decorators.py	ThreadGPUContext.get_torch_stream	6	6	0	4	0	0.0%
openhcs/core/memory/decorators.py	_get_thread_gpu_context	3	3	0	2	0	0.0%
openhcs/core/memory/decorators.py	memory_types	3	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	memory_types.decorator	4	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	memory_types.decorator.wrapper	4	1	0	2	1	66.7%
openhcs/core/memory/decorators.py	_create_dtype_wrapper	25	0	0	6	1	96.8%
openhcs/core/memory/decorators.py	_create_dtype_wrapper.dtype_wrapper	20	10	0	14	3	50.0%
openhcs/core/memory/decorators.py	_create_gpu_wrapper	8	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	_create_gpu_wrapper.gpu_wrapper	19	19	0	10	0	0.0%
openhcs/core/memory/decorators.py	_create_gpu_wrapper.gpu_wrapper.execute_with_stream	4	4	0	2	0	0.0%
openhcs/core/memory/decorators.py	_create_memory_decorator	5	0	0	0	0	100.0%
openhcs/core/memory/decorators.py	_create_memory_decorator.decorator	4	1	0	2	1	66.7%
openhcs/core/memory/decorators.py	_create_memory_decorator.decorator.inner_decorator	6	0	0	2	0	100.0%
openhcs/core/memory/decorators.py	(no function)	47	0	0	6	0	100.0%
openhcs/core/memory/dtype_scaling.py	_scale_generic	33	33	0	18	0	0.0%
openhcs/core/memory/dtype_scaling.py	_scale_pyclesperanto	24	24	0	10	0	0.0%
openhcs/core/memory/dtype_scaling.py	(no function)	10	0	0	0	0	100.0%
openhcs/core/memory/exceptions.py	MemoryConversionError.__init__	6	6	0	0	0	0.0%
openhcs/core/memory/exceptions.py	(no function)	2	0	0	0	0	100.0%
openhcs/core/memory/framework_config.py	_pyclesperanto_get_device_id	12	12	0	6	0	0.0%
openhcs/core/memory/framework_config.py	_pyclesperanto_set_device	4	4	0	2	0	0.0%
openhcs/core/memory/framework_config.py	_pyclesperanto_move_to_device	8	8	0	2	0	0.0%
openhcs/core/memory/framework_config.py	_pyclesperanto_stack_slices	14	14	0	8	0	0.0%
openhcs/core/memory/framework_config.py	_jax_assign_slice	1	1	0	0	0	0.0%
openhcs/core/memory/framework_config.py	_tensorflow_validate_dlpack	9	9	0	6	0	0.0%
openhcs/core/memory/framework_config.py	_numpy_dtype_conversion_needed	2	0	0	0	0	100.0%
openhcs/core/memory/framework_config.py	_torch_dtype_conversion_needed	1	1	0	0	0	0.0%
openhcs/core/memory/framework_config.py	(no function)	14	0	0	0	0	100.0%
openhcs/core/memory/framework_ops.py	(no function)	2	0	0	0	0	100.0%
openhcs/core/memory/gpu_cleanup.py	_create_cleanup_function	12	0	0	2	0	100.0%
openhcs/core/memory/gpu_cleanup.py	_create_cleanup_function.cleanup	1	1	0	0	0	0.0%
openhcs/core/memory/gpu_cleanup.py	_create_cleanup_function.cleanup	24	24	0	6	0	0.0%
openhcs/core/memory/gpu_cleanup.py	cleanup_all_gpu_frameworks	6	6	0	4	0	0.0%
openhcs/core/memory/gpu_cleanup.py	(no function)	14	0	0	2	0	100.0%
openhcs/core/memory/oom_recovery.py	_is_oom_error	28	28	0	16	0	0.0%
openhcs/core/memory/oom_recovery.py	_clear_cache_for_memory_type	23	23	0	10	0	0.0%
openhcs/core/memory/oom_recovery.py	_execute_with_oom_recovery	7	7	0	4	0	0.0%
openhcs/core/memory/oom_recovery.py	(no function)	10	0	0	0	0	100.0%
openhcs/core/memory/slice_processing.py	process_slices	20	20	0	8	0	0.0%
openhcs/core/memory/slice_processing.py	(no function)	3	0	0	0	0	100.0%
openhcs/core/memory/stack_utils.py	_is_2d	3	1	0	2	1	60.0%
openhcs/core/memory/stack_utils.py	_is_3d	3	1	0	2	1	60.0%
openhcs/core/memory/stack_utils.py	_enforce_gpu_device_requirements	3	2	0	4	1	28.6%
openhcs/core/memory/stack_utils.py	_allocate_stack_array	28	9	0	10	5	63.2%
openhcs/core/memory/stack_utils.py	stack_slices	34	9	0	18	7	69.2%
openhcs/core/memory/stack_utils.py	unstack_slices	22	7	0	14	6	63.9%
openhcs/core/memory/stack_utils.py	(no function)	15	0	0	0	0	100.0%
openhcs/core/memory/utils.py	_ensure_module	11	11	0	4	0	0.0%
openhcs/core/memory/utils.py	_supports_cuda_array_interface	1	1	0	0	0	0.0%
openhcs/core/memory/utils.py	_supports_dlpack	18	18	0	10	0	0.0%
openhcs/core/memory/utils.py	_get_device_id	15	15	0	6	0	0.0%
openhcs/core/memory/utils.py	_set_device	17	17	0	4	0	0.0%
openhcs/core/memory/utils.py	_move_to_device	21	21	0	6	0	0.0%
openhcs/core/memory/utils.py	(no function)	13	0	0	0	0	100.0%
openhcs/core/metadata_cache.py	MetadataCache.__init__	3	0	0	0	0	100.0%
openhcs/core/metadata_cache.py	MetadataCache.cache_metadata	18	2	0	12	3	83.3%
openhcs/core/metadata_cache.py	MetadataCache.get_component_metadata	6	6	0	2	0	0.0%
openhcs/core/metadata_cache.py	MetadataCache.get_cached_metadata	5	0	0	2	0	100.0%
openhcs/core/metadata_cache.py	MetadataCache.clear_cache	3	3	0	0	0	0.0%
openhcs/core/metadata_cache.py	MetadataCache._is_cache_valid	4	0	0	4	0	100.0%
openhcs/core/metadata_cache.py	get_metadata_cache	3	0	0	2	0	100.0%
openhcs/core/metadata_cache.py	(no function)	14	0	0	0	0	100.0%
openhcs/core/orchestrator/__init__.py	(no function)	3	0	0	0	0	100.0%
openhcs/core/orchestrator/gpu_scheduler.py	initialize_gpu_registry	19	10	0	8	2	40.7%
openhcs/core/orchestrator/gpu_scheduler.py	_detect_available_gpus	11	4	0	6	2	64.7%
openhcs/core/orchestrator/gpu_scheduler.py	get_gpu_registry_status	4	4	0	2	0	0.0%
openhcs/core/orchestrator/gpu_scheduler.py	is_gpu_registry_initialized	2	0	0	0	0	100.0%
openhcs/core/orchestrator/gpu_scheduler.py	setup_global_gpu_registry	9	0	0	4	0	100.0%
openhcs/core/orchestrator/gpu_scheduler.py	(no function)	17	0	0	0	0	100.0%
openhcs/core/orchestrator/orchestrator.py	_get_consolidate_analysis_results	5	5	0	2	0	0.0%
openhcs/core/orchestrator/orchestrator.py	_get_consolidate_analysis_results.consolidate_analysis_results	1	1	0	0	0	0.0%
openhcs/core/orchestrator/orchestrator.py	_create_merged_config	24	1	0	16	3	90.0%
openhcs/core/orchestrator/orchestrator.py	_execute_single_axis_static	30	17	0	14	4	43.2%
openhcs/core/orchestrator/orchestrator.py	_configure_worker_logging	15	15	0	0	0	0.0%
openhcs/core/orchestrator/orchestrator.py	_configure_worker_with_gpu	22	6	0	4	2	69.2%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.__init__	50	9	0	20	10	72.9%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.__setattr__	7	5	0	2	1	33.3%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.state	1	1	0	0	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.get_or_create_visualizer	26	7	0	8	3	64.7%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.get_or_create_visualizer.ping_server	4	4	0	2	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.initialize_microscope_handler	13	6	0	2	1	53.3%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.initialize	26	6	0	4	1	76.7%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.is_initialized	1	0	0	0	0	100.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator._ensure_openhcs_metadata	9	2	0	2	1	72.7%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.get_results_path	7	7	0	2	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.create_context	18	3	0	10	3	78.6%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.compile_pipelines	1	0	0	0	0	100.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator._execute_single_axis	51	51	0	22	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.cancel_execution	7	7	0	2	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.execute_compiled_plate	204	56	0	66	20	70.4%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.get_component_keys	23	6	0	12	4	71.4%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.cache_component_keys	32	7	0	20	5	73.1%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.clear_component_cache	8	8	0	6	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.metadata_cache	1	1	0	0	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.pipeline_config	1	0	0	0	0	100.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.pipeline_config	5	0	0	4	1	88.9%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator._sync_to_thread_local	2	1	0	2	1	50.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.apply_pipeline_config	8	8	0	2	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.get_effective_config	23	8	0	16	6	53.8%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.clear_pipeline_config	2	0	0	0	0	100.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.cleanup_pipeline_config	1	1	0	0	0	0.0%
openhcs/core/orchestrator/orchestrator.py	PipelineOrchestrator.__del__	4	2	0	0	0	50.0%
openhcs/core/orchestrator/orchestrator.py	(no function)	71	3	0	0	0	95.8%
openhcs/core/path_cache.py	UnifiedPathCache.__init__	7	7	0	2	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache._load_cache	9	9	0	2	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache._save_cache	7	7	0	0	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache.get_cached_path	10	10	0	4	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache.set_cached_path	5	5	0	2	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache.get_initial_path	6	6	0	4	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache.clear_cache	3	3	0	0	0	0.0%
openhcs/core/path_cache.py	UnifiedPathCache.remove_cached_path	4	4	0	2	0	0.0%
openhcs/core/path_cache.py	get_path_cache	3	3	0	2	0	0.0%
openhcs/core/path_cache.py	cache_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	get_cached_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	get_initial_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	cache_browser_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	cache_dialog_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	get_cached_browser_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	get_cached_dialog_path	1	1	0	0	0	0.0%
openhcs/core/path_cache.py	(no function)	41	41	0	0	0	0.0%
openhcs/core/pipeline/__init__.py	Pipeline.__init__	6	0	0	0	0	100.0%
openhcs/core/pipeline/__init__.py	Pipeline.steps	1	0	0	0	0	100.0%
openhcs/core/pipeline/__init__.py	Pipeline.add_step	2	2	0	0	0	0.0%
openhcs/core/pipeline/__init__.py	Pipeline.clone	4	4	0	2	0	0.0%
openhcs/core/pipeline/__init__.py	Pipeline.to_dict	1	1	0	0	0	0.0%
openhcs/core/pipeline/__init__.py	Pipeline.__repr__	0	0	2	0	0	100.0%
openhcs/core/pipeline/__init__.py	Pipeline.__str__	2	2	0	0	0	0.0%
openhcs/core/pipeline/__init__.py	(no function)	17	0	1	0	0	100.0%
openhcs/core/pipeline/compiler.py	FunctionReference.resolve	8	3	0	4	2	58.3%
openhcs/core/pipeline/compiler.py	_refresh_function_objects_in_steps	3	0	0	4	1	85.7%
openhcs/core/pipeline/compiler.py	_refresh_function_object	28	11	0	14	2	69.0%
openhcs/core/pipeline/compiler.py	_get_function_reference	11	5	0	4	1	60.0%
openhcs/core/pipeline/compiler.py	_normalize_step_attributes	10	2	0	10	2	80.0%
openhcs/core/pipeline/compiler.py	PipelineCompiler.initialize_step_plans_for_context	123	17	0	66	16	81.5%
openhcs/core/pipeline/compiler.py	PipelineCompiler.declare_zarr_stores_for_context	10	0	0	4	0	100.0%
openhcs/core/pipeline/compiler.py	PipelineCompiler.plan_materialization_flags_for_context	15	7	0	10	4	56.0%
openhcs/core/pipeline/compiler.py	PipelineCompiler.validate_memory_contracts_for_context	18	3	1	16	5	76.5%
openhcs/core/pipeline/compiler.py	PipelineCompiler.assign_gpu_resources_for_context	19	9	1	16	5	48.6%
openhcs/core/pipeline/compiler.py	PipelineCompiler.apply_global_visualizer_override_for_context	7	7	0	8	0	0.0%
openhcs/core/pipeline/compiler.py	PipelineCompiler.resolve_lazy_dataclasses_for_context	5	0	0	4	0	100.0%
openhcs/core/pipeline/compiler.py	PipelineCompiler.validate_backend_compatibility	10	3	0	4	1	71.4%
openhcs/core/pipeline/compiler.py	PipelineCompiler.ensure_analysis_materialization	14	1	0	8	1	90.9%
openhcs/core/pipeline/compiler.py	PipelineCompiler.compile_pipelines	105	21	0	34	10	76.3%
openhcs/core/pipeline/compiler.py	_resolve_step_axis_filters	27	5	0	14	3	80.5%
openhcs/core/pipeline/compiler.py	_should_process_for_well	4	4	0	2	0	0.0%
openhcs/core/pipeline/compiler.py	(no function)	51	0	0	0	0	100.0%
openhcs/core/pipeline/funcstep_contract_validator.py	missing_memory_type_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	inconsistent_memory_types_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	invalid_memory_type_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	invalid_function_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	invalid_pattern_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	missing_required_args_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	complex_pattern_error	1	1	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator.validate_pipeline	19	4	3	8	3	74.1%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator.validate_funcstep	23	2	0	14	3	86.5%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator.validate_function_pattern	21	7	0	8	3	65.5%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator._validate_required_args	9	9	0	8	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator._validate_dict_pattern_keys	28	28	0	14	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator.validate_pattern_structure	1	0	0	0	0	100.0%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator._is_function_reference	5	5	0	0	0	0.0%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator._resolve_function_reference	4	1	0	2	1	66.7%
openhcs/core/pipeline/funcstep_contract_validator.py	FuncStepContractValidator._extract_functions_from_pattern	33	5	0	20	5	81.1%
openhcs/core/pipeline/funcstep_contract_validator.py	(no function)	33	0	0	0	0	100.0%
openhcs/core/pipeline/function_contracts.py	special_outputs	2	0	0	0	0	100.0%
openhcs/core/pipeline/function_contracts.py	special_outputs.decorator	18	3	0	10	3	78.6%
openhcs/core/pipeline/function_contracts.py	special_inputs	2	0	0	0	0	100.0%
openhcs/core/pipeline/function_contracts.py	special_inputs.decorator	2	0	0	0	0	100.0%
openhcs/core/pipeline/function_contracts.py	(no function)	4	0	0	0	0	100.0%
openhcs/core/pipeline/gpu_memory_validator.py	_validate_required_libraries	20	20	0	20	0	0.0%
openhcs/core/pipeline/gpu_memory_validator.py	GPUMemoryTypeValidator.validate_step_plans	33	24	0	14	3	29.8%
openhcs/core/pipeline/gpu_memory_validator.py	(no function)	9	0	0	0	0	100.0%
openhcs/core/pipeline/materialization_flag_planner.py	MaterializationFlagPlanner.prepare_pipeline_flags	23	0	0	14	1	97.3%
openhcs/core/pipeline/materialization_flag_planner.py	MaterializationFlagPlanner._get_first_step_read_backend	3	1	0	2	1	60.0%
openhcs/core/pipeline/materialization_flag_planner.py	MaterializationFlagPlanner._resolve_materialization_backend	3	1	0	2	1	60.0%
openhcs/core/pipeline/materialization_flag_planner.py	MaterializationFlagPlanner._detect_backend_for_context	1	0	0	0	0	100.0%
openhcs/core/pipeline/materialization_flag_planner.py	(no function)	17	0	0	0	0	100.0%
openhcs/core/pipeline/path_planner.py	normalize_pattern	11	0	0	16	3	88.9%
openhcs/core/pipeline/path_planner.py	extract_attributes	6	0	0	2	0	100.0%
openhcs/core/pipeline/path_planner.py	PathPlanner.__init__	7	0	0	0	0	100.0%
openhcs/core/pipeline/path_planner.py	PathPlanner.plan	7	0	0	4	1	90.9%
openhcs/core/pipeline/path_planner.py	PathPlanner._plan_step	42	1	0	20	2	95.2%
openhcs/core/pipeline/path_planner.py	PathPlanner._get_dir	13	2	0	10	2	82.6%
openhcs/core/pipeline/path_planner.py	PathPlanner.build_output_plate_root	9	3	0	6	3	60.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._build_output_path	3	0	0	0	0	100.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._calculate_materialized_output_path	1	1	0	0	0	0.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._calculate_input_conversion_path	1	1	0	0	0	0.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._get_optional_path	4	2	0	2	1	50.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._process_special	17	2	0	14	2	87.1%
openhcs/core/pipeline/path_planner.py	PathPlanner._inject_metadata	5	0	0	4	1	88.9%
openhcs/core/pipeline/path_planner.py	PathPlanner._inject_into_pattern	7	3	0	6	1	53.8%
openhcs/core/pipeline/path_planner.py	PathPlanner._normalize_attr	3	3	0	2	0	0.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._get_input_source	3	0	0	2	0	100.0%
openhcs/core/pipeline/path_planner.py	PathPlanner._get_results_path	6	2	0	0	0	66.7%
openhcs/core/pipeline/path_planner.py	PathPlanner._validate	11	3	0	8	1	68.4%
openhcs/core/pipeline/path_planner.py	PathPlanner._validate_materialization_paths	12	1	0	10	1	90.9%
openhcs/core/pipeline/path_planner.py	PathPlanner._resolve_and_update_paths	10	0	0	4	2	85.7%
openhcs/core/pipeline/path_planner.py	PipelinePathPlanner.prepare_pipeline_paths	1	0	0	0	0	100.0%
openhcs/core/pipeline/path_planner.py	PipelinePathPlanner._build_axis_filename	3	1	0	2	1	60.0%
openhcs/core/pipeline/path_planner.py	PipelinePathPlanner.build_dict_pattern_path	5	0	0	0	0	100.0%
openhcs/core/pipeline/path_planner.py	resolve_metadata	3	3	0	2	0	0.0%
openhcs/core/pipeline/path_planner.py	register_metadata_resolver	1	1	0	0	0	0.0%
openhcs/core/pipeline/path_planner.py	_apply_scope_promotion_rules	12	12	0	8	0	0.0%
openhcs/core/pipeline/path_planner.py	(no function)	45	0	0	0	0	100.0%
openhcs/core/pipeline/pipeline_utils.py	get_core_callable	26	12	0	18	2	50.0%
openhcs/core/pipeline/pipeline_utils.py	(no function)	2	0	0	0	0	100.0%
openhcs/core/pipeline/step_attribute_stripper.py	StepAttributeStripper.strip_step_attributes	22	10	0	12	2	52.9%
openhcs/core/pipeline/step_attribute_stripper.py	(no function)	8	0	0	0	0	100.0%
openhcs/core/registry_cache.py	RegistryCacheManager.__init__	6	0	0	0	0	100.0%
openhcs/core/registry_cache.py	RegistryCacheManager.load_cache	36	15	0	14	4	62.0%
openhcs/core/registry_cache.py	RegistryCacheManager.save_cache	15	4	0	4	0	78.9%
openhcs/core/registry_cache.py	RegistryCacheManager.clear_cache	3	3	0	2	0	0.0%
openhcs/core/registry_cache.py	RegistryCacheManager._validate_mtimes	8	2	0	6	2	71.4%
openhcs/core/registry_cache.py	serialize_plugin_class	1	0	0	0	0	100.0%
openhcs/core/registry_cache.py	deserialize_plugin_class	4	0	0	0	0	100.0%
openhcs/core/registry_cache.py	get_package_file_mtimes	13	0	0	4	0	100.0%
openhcs/core/registry_cache.py	(no function)	23	0	0	0	0	100.0%
openhcs/core/registry_discovery.py	discover_registry_classes	31	8	0	16	3	76.6%
openhcs/core/registry_discovery.py	discover_registry_classes_recursive	32	32	0	16	0	0.0%
openhcs/core/registry_discovery.py	(no function)	9	0	0	0	0	100.0%
openhcs/core/roi.py	PolygonShape.__post_init__	4	2	0	4	2	50.0%
openhcs/core/roi.py	MaskShape.__post_init__	4	4	0	4	0	0.0%
openhcs/core/roi.py	ROI.__post_init__	5	2	0	6	2	63.6%
openhcs/core/roi.py	extract_rois_from_labeled_mask	25	4	0	16	6	75.6%
openhcs/core/roi.py	materialize_rois	7	7	1	2	0	0.0%
openhcs/core/roi.py	load_rois_from_json	29	29	0	18	0	0.0%
openhcs/core/roi.py	load_rois_from_zip	27	27	0	10	0	0.0%
openhcs/core/roi.py	(no function)	44	0	0	0	0	100.0%
openhcs/core/steps/__init__.py	(no function)	8	2	0	0	0	75.0%
openhcs/core/steps/abstract.py	AbstractStep.__init__	13	0	0	0	0	100.0%
openhcs/core/steps/abstract.py	AbstractStep.process	0	0	17	0	0	100.0%
openhcs/core/steps/abstract.py	(no function)	13	1	2	2	1	86.7%
openhcs/core/steps/function_step.py	_generate_materialized_paths	6	0	0	2	0	100.0%
openhcs/core/steps/function_step.py	_filter_special_outputs_for_function	9	0	0	6	1	93.3%
openhcs/core/steps/function_step.py	_save_materialized_data	6	0	0	2	0	100.0%
openhcs/core/steps/function_step.py	get_all_image_paths	15	0	0	4	0	100.0%
openhcs/core/steps/function_step.py	create_image_path_getter	2	0	0	0	0	100.0%
openhcs/core/steps/function_step.py	create_image_path_getter.get_paths_for_axis	1	0	0	0	0	100.0%
openhcs/core/steps/function_step.py	_bulk_preload_step_images	21	1	0	8	1	93.1%
openhcs/core/steps/function_step.py	_bulk_writeout_step_images	20	20	0	6	0	0.0%
openhcs/core/steps/function_step.py	_calculate_zarr_dimensions	12	0	0	2	0	100.0%
openhcs/core/steps/function_step.py	_is_3d	1	0	0	0	0	100.0%
openhcs/core/steps/function_step.py	_execute_function_core	75	13	0	24	5	81.8%
openhcs/core/steps/function_step.py	_execute_chain_core	28	7	0	8	2	69.4%
openhcs/core/steps/function_step.py	_process_single_pattern_group	109	21	0	42	12	76.8%
openhcs/core/steps/function_step.py	FunctionStep.__init__	13	6	0	10	2	47.8%
openhcs/core/steps/function_step.py	FunctionStep.process	148	11	0	44	8	90.1%
openhcs/core/steps/function_step.py	FunctionStep._extract_component_metadata	8	8	0	2	0	0.0%
openhcs/core/steps/function_step.py	FunctionStep._create_openhcs_metadata_for_materialization	41	41	0	8	0	0.0%
openhcs/core/steps/function_step.py	FunctionStep._detect_available_backends	9	9	0	6	0	0.0%
openhcs/core/steps/function_step.py	FunctionStep._build_analysis_filename	16	1	0	10	3	84.6%
openhcs/core/steps/function_step.py	FunctionStep._materialize_special_outputs	34	3	0	14	2	89.6%
openhcs/core/steps/function_step.py	_update_metadata_for_zarr_conversion	14	4	0	2	1	68.8%
openhcs/core/steps/function_step.py	(no function)	35	1	0	2	1	94.6%
openhcs/core/streaming_config_factory.py	create_streaming_config	17	1	0	6	1	91.3%
openhcs/core/streaming_config_factory.py	create_streaming_config._get_streaming_kwargs	7	0	0	6	1	92.3%
openhcs/core/streaming_config_factory.py	create_streaming_config._create_visualizer	3	0	0	0	0	100.0%
openhcs/core/streaming_config_factory.py	build_component_order	10	0	0	4	1	92.9%
openhcs/core/streaming_config_factory.py	get_all_streaming_ports	17	17	0	10	0	0.0%
openhcs/core/streaming_config_factory.py	(no function)	9	1	0	2	1	81.8%
openhcs/core/utils.py	_ModulePlaceholder.__init__	1	0	0	0	0	100.0%
openhcs/core/utils.py	_ModulePlaceholder.__bool__	1	0	0	0	0	100.0%
openhcs/core/utils.py	_ModulePlaceholder.__getattr__	1	0	0	0	0	100.0%
openhcs/core/utils.py	_ModulePlaceholder.__call__	1	1	0	0	0	0.0%
openhcs/core/utils.py	_ModulePlaceholder.__repr__	0	0	1	0	0	100.0%
openhcs/core/utils.py	optional_import	5	0	0	0	0	100.0%
openhcs/core/utils.py	get_thread_activity	1	1	0	0	0	0.0%
openhcs/core/utils.py	get_active_threads	1	1	0	0	0	0.0%
openhcs/core/utils.py	clear_thread_activity	3	3	0	0	0	0.0%
openhcs/core/utils.py	track_thread_activity	5	5	0	2	0	0.0%
openhcs/core/utils.py	track_thread_activity.decorator	2	2	0	0	0	0.0%
openhcs/core/utils.py	track_thread_activity.decorator.wrapper	27	27	0	6	0	0.0%
openhcs/core/utils.py	analyze_thread_activity	37	37	0	28	0	0.0%
openhcs/core/utils.py	print_thread_activity_report	19	19	0	6	0	0.0%
openhcs/core/utils.py	natural_sort_key	8	0	0	4	0	100.0%
openhcs/core/utils.py	natural_sort	1	0	0	0	0	100.0%
openhcs/core/utils.py	natural_sort_inplace	1	1	0	0	0	0.0%
openhcs/core/utils.py	WellFilterProcessor.resolve_compilation_filter	22	17	0	18	4	22.5%
openhcs/core/utils.py	WellFilterProcessor.should_materialize_well	10	10	0	8	0	0.0%
openhcs/core/utils.py	WellFilterProcessor.expand_well_filter	7	7	0	6	0	0.0%
openhcs/core/utils.py	WellFilterProcessor._parse_well_pattern	12	12	0	8	0	0.0%
openhcs/core/utils.py	WellFilterProcessor._expand_row_pattern	5	5	0	2	0	0.0%
openhcs/core/utils.py	WellFilterProcessor._expand_col_pattern	10	10	0	4	0	0.0%
openhcs/core/utils.py	WellFilterProcessor._expand_col_pattern.get_numeric_suffix	2	2	0	0	0	0.0%
openhcs/core/utils.py	WellFilterProcessor._expand_range_pattern	7	7	0	0	0	0.0%
openhcs/core/utils.py	(no function)	49	0	1	0	0	100.0%
openhcs/core/xdg_paths.py	get_openhcs_data_dir	3	0	0	0	0	100.0%
openhcs/core/xdg_paths.py	get_openhcs_cache_dir	3	0	0	0	0	100.0%
openhcs/core/xdg_paths.py	get_openhcs_config_dir	3	3	0	0	0	0.0%
openhcs/core/xdg_paths.py	get_legacy_openhcs_dir	1	0	0	0	0	100.0%
openhcs/core/xdg_paths.py	migrate_cache_file	16	16	0	4	0	0.0%
openhcs/core/xdg_paths.py	migrate_cache_directory	18	18	0	6	0	0.0%
openhcs/core/xdg_paths.py	migrate_all_legacy_cache_files	23	23	0	12	0	0.0%
openhcs/core/xdg_paths.py	get_cache_file_path	7	1	0	4	1	81.8%
openhcs/core/xdg_paths.py	get_config_file_path	7	7	0	4	0	0.0%
openhcs/core/xdg_paths.py	get_data_file_path	7	7	0	4	0	0.0%
openhcs/core/xdg_paths.py	(no function)	15	0	0	0	0	100.0%
openhcs/debug/__init__.py	(no function)	1	0	0	0	0	100.0%
openhcs/debug/example_export.py	create_pipeline	18	18	0	0	0	0.0%
openhcs/debug/example_export.py	setup_signal_handlers	5	5	0	0	0	0.0%
openhcs/debug/example_export.py	setup_signal_handlers.cleanup_and_exit	2	2	0	0	0	0.0%
openhcs/debug/example_export.py	run_pipeline	9	9	0	2	0	0.0%
openhcs/debug/example_export.py	(no function)	16	16	3	0	0	0.0%
openhcs/debug/example_export_clean.py	create_pipeline	18	18	0	0	0	0.0%
openhcs/debug/example_export_clean.py	setup_signal_handlers	5	5	0	0	0	0.0%
openhcs/debug/example_export_clean.py	setup_signal_handlers.cleanup_and_exit	2	2	0	0	0	0.0%
openhcs/debug/example_export_clean.py	run_pipeline	9	9	0	2	0	0.0%
openhcs/debug/example_export_clean.py	(no function)	16	16	3	0	0	0.0%
openhcs/debug/export.py	create_pipeline	18	18	0	0	0	0.0%
openhcs/debug/export.py	setup_signal_handlers	5	5	0	0	0	0.0%
openhcs/debug/export.py	setup_signal_handlers.cleanup_and_exit	2	2	0	0	0	0.0%
openhcs/debug/export.py	run_pipeline	9	9	0	2	0	0.0%
openhcs/debug/export.py	export_debug_data	17	17	0	4	0	0.0%
openhcs/debug/export.py	(no function)	18	18	3	0	0	0.0%
openhcs/debug/pickle_to_python.py	collect_imports_from_data	6	0	0	0	0	100.0%
openhcs/debug/pickle_to_python.py	collect_imports_from_data.register_imports	22	5	0	16	2	81.6%
openhcs/debug/pickle_to_python.py	_is_external_registered_function	1	0	0	0	0	100.0%
openhcs/debug/pickle_to_python.py	_get_function_library_name	6	6	0	4	0	0.0%
openhcs/debug/pickle_to_python.py	_create_openhcs_library_modules	21	21	0	12	0	0.0%
openhcs/debug/pickle_to_python.py	format_imports_as_strings	21	4	0	14	2	82.9%
openhcs/debug/pickle_to_python.py	generate_complete_function_pattern_code	19	19	0	8	0	0.0%
openhcs/debug/pickle_to_python.py	_value_to_repr	19	6	0	14	2	63.6%
openhcs/debug/pickle_to_python.py	generate_clean_dataclass_repr	42	8	0	30	5	76.4%
openhcs/debug/pickle_to_python.py	convert_pickle_to_python	60	60	1	4	0	0.0%
openhcs/debug/pickle_to_python.py	generate_readable_function_repr	50	23	0	34	4	48.8%
openhcs/debug/pickle_to_python.py	generate_readable_function_repr.get_name	4	1	0	2	1	66.7%
openhcs/debug/pickle_to_python.py	_format_parameter_value	24	2	0	14	2	89.5%
openhcs/debug/pickle_to_python.py	_collect_dataclass_classes_from_object	26	26	0	18	0	0.0%
openhcs/debug/pickle_to_python.py	_collect_enum_classes_from_step	16	16	0	12	0	0.0%
openhcs/debug/pickle_to_python.py	_generate_step_parameters	3	0	0	0	0	100.0%
openhcs/debug/pickle_to_python.py	generate_complete_pipeline_steps_code	50	11	0	18	2	77.9%
openhcs/debug/pickle_to_python.py	generate_complete_orchestrator_code	128	128	0	48	0	0.0%
openhcs/debug/pickle_to_python.py	generate_config_code	9	0	0	2	0	100.0%
openhcs/debug/pickle_to_python.py	main	7	7	0	0	0	0.0%
openhcs/debug/pickle_to_python.py	(no function)	28	0	2	0	0	100.0%
openhcs/formats/func_arg_prep.py	_resolve_function_references	15	3	0	8	1	82.6%
openhcs/formats/func_arg_prep.py	prepare_patterns_and_functions	72	22	0	26	4	65.3%
openhcs/formats/func_arg_prep.py	prepare_patterns_and_functions.extract_func_and_args	7	3	0	6	1	53.8%
openhcs/formats/func_arg_prep.py	(no function)	2	0	0	0	0	100.0%
openhcs/formats/pattern/__init__.py	(no function)	0	0	0	0	0	100.0%
openhcs/formats/pattern/pattern_discovery.py	has_placeholders	1	0	0	0	0	100.0%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine.__init__	2	0	0	0	0	100.0%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine.path_list_from_pattern	30	11	0	18	6	60.4%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine._matches_pattern_structure	12	2	0	10	2	81.8%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine.group_patterns_by_component	14	3	0	8	3	72.7%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine.auto_detect_patterns	19	4	0	12	4	74.2%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine._find_and_filter_images	25	5	0	14	4	76.9%
openhcs/formats/pattern/pattern_discovery.py	PatternDiscoveryEngine._generate_patterns_for_files	44	9	0	32	9	76.3%
openhcs/formats/pattern/pattern_discovery.py	(no function)	19	0	0	0	0	100.0%
openhcs/introspection/__init__.py	(no function)	3	0	0	0	0	100.0%
openhcs/introspection/signature_analyzer.py	_get_openhcs_modules	10	3	0	2	0	75.0%
openhcs/introspection/signature_analyzer.py	DocstringExtractor.extract	10	4	0	4	2	57.1%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._resolve_lazy_target	8	5	0	10	2	27.8%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._parse_docstring_ast	10	1	0	6	2	81.2%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._parse_ast_docstring	1	0	0	0	0	100.0%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._parse_docstring	104	23	0	56	8	75.6%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._parse_docstring._finalize_current_param	3	0	0	2	0	100.0%
openhcs/introspection/signature_analyzer.py	DocstringExtractor._parse_inline_parameters	9	2	0	4	1	76.9%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer.analyze	9	5	0	8	3	41.2%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._analyze_callable	56	16	0	18	4	73.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._should_skip_first_parameter	3	0	0	2	0	100.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._extract_original_parameters	33	21	0	20	4	34.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._analyze_dataclass	41	41	0	16	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._extract_inline_field_docs	78	78	0	44	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._extract_field_type_docs	25	25	0	16	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._extract_class_source_from_file	21	21	0	12	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer.extract_field_documentation	14	14	0	6	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._resolve_lazy_dataclass_for_docs	27	27	0	10	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._extract_all_field_docs	38	38	0	30	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer.extract_field_documentation_from_context	6	6	0	6	0	0.0%
openhcs/introspection/signature_analyzer.py	SignatureAnalyzer._analyze_dataclass_instance	12	12	0	6	0	0.0%
openhcs/introspection/signature_analyzer.py	(no function)	71	0	0	0	0	100.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterInfo.from_parameter_info	1	0	0	0	0	100.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer.analyze	20	15	0	14	3	23.5%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer._analyze_callable	5	0	0	2	0	100.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer._analyze_dataclass_type	5	5	0	2	0	0.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer._analyze_object_instance	22	22	0	16	0	0.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer._analyze_dataclass_instance	15	15	0	6	0	0.0%
openhcs/introspection/unified_parameter_analyzer.py	UnifiedParameterAnalyzer.analyze_nested	7	7	0	4	0	0.0%
openhcs/introspection/unified_parameter_analyzer.py	(no function)	30	0	0	0	0	100.0%
openhcs/io/__init__.py	__getattr__	12	12	0	4	0	0.0%
openhcs/io/__init__.py	(no function)	14	0	0	0	0	100.0%
openhcs/io/async_init.py	_background_init	5	5	0	0	0	0.0%
openhcs/io/async_init.py	start_async_initialization	4	4	0	2	0	0.0%
openhcs/io/async_init.py	wait_for_initialization	1	1	0	0	0	0.0%
openhcs/io/async_init.py	(no function)	8	0	0	0	0	100.0%
openhcs/io/atomic.py	file_lock	11	4	0	0	0	63.6%
openhcs/io/atomic.py	_acquire_lock_with_timeout	6	2	0	4	2	60.0%
openhcs/io/atomic.py	_try_acquire_lock	9	3	0	2	1	63.6%
openhcs/io/atomic.py	_cleanup_lock	14	5	0	6	3	60.0%
openhcs/io/atomic.py	atomic_write_json	9	2	0	2	1	72.7%
openhcs/io/atomic.py	_write_to_temp_file	5	0	0	0	0	100.0%
openhcs/io/atomic.py	atomic_update_json	10	2	0	0	0	80.0%
openhcs/io/atomic.py	_read_json_or_default	8	3	0	2	0	70.0%
openhcs/io/atomic.py	(no function)	38	3	0	0	0	92.1%
openhcs/io/backend_registry.py	get_backend_instance	13	3	0	4	1	76.5%
openhcs/io/backend_registry.py	create_storage_registry	13	3	0	4	0	82.4%
openhcs/io/backend_registry.py	cleanup_backend_connections	33	18	0	8	3	48.8%
openhcs/io/backend_registry.py	cleanup_all_backends	9	9	0	4	0	0.0%
openhcs/io/backend_registry.py	(no function)	11	0	0	0	0	100.0%
openhcs/io/base.py	DataSink.save	0	0	13	0	0	100.0%
openhcs/io/base.py	DataSink.save_batch	0	0	14	0	0	100.0%
openhcs/io/base.py	DataSource.load	0	0	13	0	0	100.0%
openhcs/io/base.py	DataSource.load_batch	0	0	13	0	0	100.0%
openhcs/io/base.py	DataSource.list_files	0	0	14	0	0	100.0%
openhcs/io/base.py	DataSource.exists	0	0	2	0	0	100.0%
openhcs/io/base.py	DataSource.is_file	0	0	2	0	0	100.0%
openhcs/io/base.py	DataSource.is_dir	0	0	2	0	0	100.0%
openhcs/io/base.py	DataSource.list_dir	0	0	2	0	0	100.0%
openhcs/io/base.py	VirtualBackend.load	0	0	16	0	0	100.0%
openhcs/io/base.py	VirtualBackend.load_batch	0	0	16	0	0	100.0%
openhcs/io/base.py	VirtualBackend.list_files	0	0	18	0	0	100.0%
openhcs/io/base.py	VirtualBackend.requires_filesystem_validation	1	1	0	0	0	0.0%
openhcs/io/base.py	BackendBase.requires_filesystem_validation	0	0	2	0	0	100.0%
openhcs/io/base.py	ReadOnlyBackend.requires_filesystem_validation	1	1	0	0	0	0.0%
openhcs/io/base.py	StorageBackend.requires_filesystem_validation	1	1	0	0	0	0.0%
openhcs/io/base.py	StorageBackend.exists	13	2	0	0	0	84.6%
openhcs/io/base.py	_create_storage_registry	2	0	0	0	0	100.0%
openhcs/io/base.py	_LazyStorageRegistry.__getitem__	2	0	0	0	0	100.0%
openhcs/io/base.py	_LazyStorageRegistry.__setitem__	1	1	0	0	0	0.0%
openhcs/io/base.py	_LazyStorageRegistry.__contains__	2	2	0	0	0	0.0%
openhcs/io/base.py	_LazyStorageRegistry.get	2	2	0	0	0	0.0%
openhcs/io/base.py	_LazyStorageRegistry.keys	2	2	0	0	0	0.0%
openhcs/io/base.py	_LazyStorageRegistry.values	2	2	0	0	0	0.0%
openhcs/io/base.py	_LazyStorageRegistry.items	2	2	0	0	0	0.0%
openhcs/io/base.py	ensure_storage_registry	6	0	0	4	1	90.0%
openhcs/io/base.py	get_backend	5	5	0	2	0	0.0%
openhcs/io/base.py	reset_memory_backend	3	0	0	0	0	100.0%
openhcs/io/base.py	(no function)	38	0	31	0	0	100.0%
openhcs/io/disk.py	optional_import	4	2	0	0	0	50.0%
openhcs/io/disk.py	FileFormatRegistry.__init__	2	0	0	0	0	100.0%
openhcs/io/disk.py	FileFormatRegistry.register	3	0	0	0	0	100.0%
openhcs/io/disk.py	FileFormatRegistry.get_writer	1	0	0	0	0	100.0%
openhcs/io/disk.py	FileFormatRegistry.get_reader	1	0	0	0	0	100.0%
openhcs/io/disk.py	FileFormatRegistry.is_registered	1	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend.__init__	2	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._register_formats	6	0	0	6	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._jax_writer	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._jax_reader	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._cupy_writer	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._cupy_reader	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._tensorflow_writer	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._tensorflow_reader	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._tiff_writer	1	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._tiff_reader	12	9	0	2	1	28.6%
openhcs/io/disk.py	DiskStorageBackend._text_writer	1	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._text_reader	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._json_writer	3	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._json_reader	2	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend._csv_writer	15	9	0	6	2	38.1%
openhcs/io/disk.py	DiskStorageBackend._roi_zip_writer	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._roi_zip_reader	2	2	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._csv_reader	4	4	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.load	15	6	0	8	3	52.2%
openhcs/io/disk.py	DiskStorageBackend.save	14	3	0	4	1	77.8%
openhcs/io/disk.py	DiskStorageBackend.load_batch	5	0	0	2	0	100.0%
openhcs/io/disk.py	DiskStorageBackend.save_batch	13	3	0	8	2	76.2%
openhcs/io/disk.py	DiskStorageBackend.list_files	12	1	0	6	1	88.9%
openhcs/io/disk.py	DiskStorageBackend._list_files_breadth_first	18	3	0	12	3	80.0%
openhcs/io/disk.py	DiskStorageBackend.list_dir	6	2	0	4	2	60.0%
openhcs/io/disk.py	DiskStorageBackend.delete	13	13	0	4	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.delete_all	10	10	0	4	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.ensure_directory	6	2	0	0	0	66.7%
openhcs/io/disk.py	DiskStorageBackend.exists	1	0	0	0	0	100.0%
openhcs/io/disk.py	DiskStorageBackend.create_symlink	10	10	0	6	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.is_symlink	1	1	0	0	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.is_file	7	2	0	4	2	63.6%
openhcs/io/disk.py	DiskStorageBackend.is_dir	7	2	0	4	2	63.6%
openhcs/io/disk.py	DiskStorageBackend.move	12	12	0	4	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.stat	18	18	0	8	0	0.0%
openhcs/io/disk.py	DiskStorageBackend.copy	12	12	0	6	0	0.0%
openhcs/io/disk.py	DiskStorageBackend._save_rois	45	24	0	14	2	45.8%
openhcs/io/disk.py	(no function)	64	6	0	2	1	89.4%
openhcs/io/exceptions.py	(no function)	14	0	0	0	0	100.0%
openhcs/io/fiji_stream.py	FijiStreamingBackend._prepare_rois_data	4	4	0	0	0	0.0%
openhcs/io/fiji_stream.py	FijiStreamingBackend.save_batch	54	54	0	14	0	0.0%
openhcs/io/fiji_stream.py	FijiStreamingBackend.__del__	5	5	0	0	0	0.0%
openhcs/io/fiji_stream.py	(no function)	17	0	0	0	0	100.0%
openhcs/io/filemanager.py	FileManager.__init__	4	1	0	2	1	66.7%
openhcs/io/filemanager.py	FileManager._get_backend	9	1	0	4	1	84.6%
openhcs/io/filemanager.py	FileManager.load	8	5	0	0	0	37.5%
openhcs/io/filemanager.py	FileManager.save	11	5	0	2	0	61.5%
openhcs/io/filemanager.py	FileManager.load_batch	8	5	0	0	0	37.5%
openhcs/io/filemanager.py	FileManager.save_batch	8	3	0	0	0	62.5%
openhcs/io/filemanager.py	FileManager.list_image_files	4	0	0	0	0	100.0%
openhcs/io/filemanager.py	FileManager.list_files	4	0	0	0	0	100.0%
openhcs/io/filemanager.py	FileManager.find_file_recursive	5	0	0	4	0	100.0%
openhcs/io/filemanager.py	FileManager.list_dir	12	5	0	2	1	57.1%
openhcs/io/filemanager.py	FileManager.ensure_directory	2	0	0	0	0	100.0%
openhcs/io/filemanager.py	FileManager.exists	2	0	0	0	0	100.0%
openhcs/io/filemanager.py	FileManager.mirror_directory_with_symlinks	14	14	0	2	0	0.0%
openhcs/io/filemanager.py	FileManager.create_symlink	14	14	0	6	0	0.0%
openhcs/io/filemanager.py	FileManager.delete	5	2	0	0	0	60.0%
openhcs/io/filemanager.py	FileManager.delete_all	7	7	0	0	0	0.0%
openhcs/io/filemanager.py	FileManager.copy	9	9	0	2	0	0.0%
openhcs/io/filemanager.py	FileManager.move	14	14	0	6	0	0.0%
openhcs/io/filemanager.py	FileManager.collect_dirs_and_files	33	33	0	8	0	0.0%
openhcs/io/filemanager.py	FileManager.is_file	5	2	0	0	0	60.0%
openhcs/io/filemanager.py	FileManager.is_dir	7	4	0	0	0	42.9%
openhcs/io/filemanager.py	FileManager.is_symlink	5	5	0	0	0	0.0%
openhcs/io/filemanager.py	(no function)	30	0	0	0	0	100.0%
openhcs/io/memory.py	MemoryStorageBackend.__init__	2	0	0	0	0	100.0%
openhcs/io/memory.py	MemoryStorageBackend._normalize	4	1	0	2	1	66.7%
openhcs/io/memory.py	MemoryStorageBackend.load	7	2	0	4	2	63.6%
openhcs/io/memory.py	MemoryStorageBackend.save	7	2	0	4	2	63.6%
openhcs/io/memory.py	MemoryStorageBackend.load_batch	5	0	0	2	0	100.0%
openhcs/io/memory.py	MemoryStorageBackend.save_batch	4	1	0	4	1	75.0%
openhcs/io/memory.py	MemoryStorageBackend.list_files	22	3	0	16	6	76.3%
openhcs/io/memory.py	MemoryStorageBackend.list_dir	15	15	0	10	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.delete	12	7	0	8	2	35.0%
openhcs/io/memory.py	MemoryStorageBackend.delete_all	11	11	0	4	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.ensure_directory	9	0	0	4	0	100.0%
openhcs/io/memory.py	MemoryStorageBackend.create_symlink	21	21	0	14	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.is_symlink	8	8	0	4	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.is_file	7	0	0	4	0	100.0%
openhcs/io/memory.py	MemoryStorageBackend.is_dir	7	1	0	4	1	81.8%
openhcs/io/memory.py	MemoryStorageBackend._resolve_path	9	9	0	6	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.move	23	23	0	14	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.move._resolve_parent	2	2	0	0	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.copy	24	24	0	14	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.copy._resolve_parent	2	2	0	0	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.stat	20	20	0	12	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend.clear_files_only	14	8	0	8	2	36.4%
openhcs/io/memory.py	MemoryStorageBackend._is_gpu_object	12	12	0	10	0	0.0%
openhcs/io/memory.py	MemoryStorageBackend._explicit_gpu_delete	14	14	0	6	0	0.0%
openhcs/io/memory.py	MemorySymlink.__init__	1	1	0	0	0	0.0%
openhcs/io/memory.py	MemorySymlink.__repr__	0	0	1	0	0	100.0%
openhcs/io/memory.py	(no function)	32	0	1	0	0	100.0%
openhcs/io/metadata_migration.py	detect_legacy_format	6	6	0	4	0	0.0%
openhcs/io/metadata_migration.py	_rename_zarr_directories	14	14	0	8	0	0.0%
openhcs/io/metadata_migration.py	migrate_legacy_metadata	19	19	0	10	0	0.0%
openhcs/io/metadata_migration.py	migrate_plate_metadata	44	44	0	6	0	0.0%
openhcs/io/metadata_migration.py	main	20	20	0	8	0	0.0%
openhcs/io/metadata_migration.py	(no function)	14	0	2	0	0	100.0%
openhcs/io/metadata_writer.py	get_subdirectory_name	3	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	resolve_subdirectory_path	2	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter.__init__	2	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter._execute_update	4	2	0	0	0	50.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter._ensure_subdirectories_structure	3	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter.update_available_backends	3	3	0	0	0	0.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter.update_available_backends.update_func	4	4	0	2	0	0.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter.merge_subdirectory_metadata	3	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	AtomicMetadataWriter.merge_subdirectory_metadata.update_func	12	0	0	8	0	100.0%
openhcs/io/metadata_writer.py	get_metadata_path	1	0	0	0	0	100.0%
openhcs/io/metadata_writer.py	(no function)	24	0	0	0	0	100.0%
openhcs/io/napari_stream.py	NapariStreamingBackend._prepare_shapes_data	3	3	0	0	0	0.0%
openhcs/io/napari_stream.py	NapariStreamingBackend.save_batch	41	41	0	10	0	0.0%
openhcs/io/napari_stream.py	NapariStreamingBackend._cleanup_shared_memory	10	10	0	6	0	0.0%
openhcs/io/napari_stream.py	NapariStreamingBackend.__del__	1	1	0	0	0	0.0%
openhcs/io/napari_stream.py	(no function)	18	0	0	0	0	100.0%
openhcs/io/omero_local.py	OMEROFileFormatRegistry.__init__	2	2	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROFileFormatRegistry.register_text_format	4	4	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROFileFormatRegistry.is_text_format	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROFileFormatRegistry.get_mimetype	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.__init__	22	22	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._register_formats	3	3	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.__getstate__	3	3	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.__setstate__	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._get_connection	33	33	0	12	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._ensure_connection	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._get_parser_from_plate_metadata	7	7	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._get_microscope_type_from_plate_metadata	7	7	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._load_parser	8	8	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._load_plate_structure	32	32	0	8	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.load	41	41	0	18	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.save	9	9	0	4	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_as_table_or_annotation	37	37	0	20	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_csv_as_table	87	87	0	32	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_text_annotation	22	22	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_image	18	18	0	8	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_image.planes	6	6	0	8	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.exists	4	4	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.delete	6	6	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._parse_omero_path	14	14	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._get_image_id	8	8	0	6	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._find_plate_by_name	5	5	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.save_batch	34	34	0	16	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._get_or_create_plate_with_lock	18	18	0	4	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._create_derived_plate	39	39	0	8	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._write_planes_to_plate	65	65	0	14	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._write_planes_to_plate.plane_generator	15	15	0	12	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.list_files	28	28	0	20	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.exists	8	8	0	2	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.ensure_directory	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend.load_batch	1	1	0	0	0	0.0%
openhcs/io/omero_local.py	OMEROLocalBackend._save_rois	68	68	0	38	0	0.0%
openhcs/io/omero_local.py	(no function)	78	3	0	0	0	96.2%
openhcs/io/pipeline_migration.py	detect_legacy_pipeline	15	15	0	12	0	0.0%
openhcs/io/pipeline_migration.py	create_migration_mapping	3	3	0	0	0	0.0%
openhcs/io/pipeline_migration.py	_generate_string_variations	2	2	0	0	0	0.0%
openhcs/io/pipeline_migration.py	migrate_legacy_group_by	10	10	0	4	0	0.0%
openhcs/io/pipeline_migration.py	migrate_legacy_variable_components	14	14	0	8	0	0.0%
openhcs/io/pipeline_migration.py	migrate_pipeline_steps	9	9	0	6	0	0.0%
openhcs/io/pipeline_migration.py	migrate_pipeline_file	41	41	0	6	0	0.0%
openhcs/io/pipeline_migration.py	LegacyGroupByUnpickler.find_class	4	4	0	2	0	0.0%
openhcs/io/pipeline_migration.py	LegacyGroupByUnpickler._create_migrating_groupby_class	3	3	0	0	0	0.0%
openhcs/io/pipeline_migration.py	LegacyGroupByUnpickler._create_migrating_groupby_class.MigratingGroupBy.__new__	17	17	0	6	0	0.0%
openhcs/io/pipeline_migration.py	load_pipeline_with_migration	16	16	0	4	0	0.0%
openhcs/io/pipeline_migration.py	(no function)	16	0	0	0	0	100.0%
openhcs/io/streaming.py	StreamingBackend.__init__	3	3	0	0	0	0.0%
openhcs/io/streaming.py	StreamingBackend._get_publisher	20	20	0	6	0	0.0%
openhcs/io/streaming.py	StreamingBackend._parse_component_metadata	4	4	0	0	0	0.0%
openhcs/io/streaming.py	StreamingBackend._detect_data_type	4	4	0	0	0	0.0%
openhcs/io/streaming.py	StreamingBackend._create_shared_memory	17	17	0	0	0	0.0%
openhcs/io/streaming.py	StreamingBackend._register_with_queue_tracker	5	5	0	2	0	0.0%
openhcs/io/streaming.py	StreamingBackend.save	3	3	0	2	0	0.0%
openhcs/io/streaming.py	StreamingBackend.cleanup	29	29	0	6	0	0.0%
openhcs/io/streaming.py	(no function)	21	0	0	0	0	100.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.__init__	5	0	0	0	0	100.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend._normalize_relative_path	2	0	0	0	0	100.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend._load_mapping	18	3	0	8	3	76.9%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend._resolve_path	14	4	0	4	2	66.7%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.load	2	2	0	0	0	0.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.load_batch	2	0	0	0	0	100.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.list_files	36	13	0	20	6	62.5%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.list_dir	19	19	0	10	0	0.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.exists	10	3	0	4	1	71.4%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.is_file	8	8	0	2	0	0.0%
openhcs/io/virtual_workspace.py	VirtualWorkspaceBackend.is_dir	10	10	0	4	0	0.0%
openhcs/io/virtual_workspace.py	(no function)	24	0	0	0	0	100.0%
openhcs/io/zarr.py	passthrough_to_disk	3	0	0	0	0	100.0%
openhcs/io/zarr.py	passthrough_to_disk.decorator	13	1	0	8	2	85.7%
openhcs/io/zarr.py	passthrough_to_disk.decorator.wrapper	14	0	0	8	2	90.9%
openhcs/io/zarr.py	_load_ome_zarr	11	3	0	0	0	72.7%
openhcs/io/zarr.py	start_ome_zarr_loading_async	4	4	0	2	0	0.0%
openhcs/io/zarr.py	_ensure_ome_zarr	11	4	0	8	2	57.9%
openhcs/io/zarr.py	ZarrStorageBackend.__init__	6	0	0	2	0	100.0%
openhcs/io/zarr.py	ZarrStorageBackend._get_compressor	13	6	0	10	4	47.8%
openhcs/io/zarr.py	ZarrStorageBackend._calculate_chunks	6	2	0	4	1	50.0%
openhcs/io/zarr.py	ZarrStorageBackend._split_store_and_key	8	0	0	2	0	100.0%
openhcs/io/zarr.py	ZarrStorageBackend.save	12	12	0	4	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.load_batch	43	2	0	28	7	87.3%
openhcs/io/zarr.py	ZarrStorageBackend.save_batch	94	15	0	36	13	78.5%
openhcs/io/zarr.py	ZarrStorageBackend._ensure_plate_metadata_with_lock	12	4	0	4	2	62.5%
openhcs/io/zarr.py	ZarrStorageBackend._ensure_plate_metadata	29	0	0	12	2	95.1%
openhcs/io/zarr.py	ZarrStorageBackend.load	16	16	0	10	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.list_files	37	14	0	28	7	55.4%
openhcs/io/zarr.py	ZarrStorageBackend.list_files._matches_filters	5	2	0	4	2	55.6%
openhcs/io/zarr.py	ZarrStorageBackend.list_dir	10	10	0	0	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.list_dir._get_entries	4	4	0	2	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.delete	28	28	0	10	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.delete_all	9	9	0	2	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.exists	13	10	0	6	1	21.1%
openhcs/io/zarr.py	ZarrStorageBackend.ensure_directory	1	0	0	0	0	100.0%
openhcs/io/zarr.py	ZarrStorageBackend.create_symlink	13	13	0	8	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.is_symlink	14	14	0	4	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend._auto_chunks	2	2	0	0	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.is_file	25	25	0	12	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.is_dir	26	26	0	12	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.move	24	24	0	10	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.copy	21	21	0	8	0	0.0%
openhcs/io/zarr.py	ZarrStorageBackend.stat	20	20	0	10	0	0.0%
openhcs/io/zarr.py	ZarrSymlink.__init__	1	1	0	0	0	0.0%
openhcs/io/zarr.py	ZarrSymlink.__repr__	0	0	1	0	0	100.0%
openhcs/io/zarr.py	(no function)	54	3	1	0	0	94.4%
openhcs/microscopes/__init__.py	(no function)	3	0	0	0	0	100.0%
openhcs/microscopes/handler_registry_service.py	get_all_handler_types	1	1	0	0	0	0.0%
openhcs/microscopes/handler_registry_service.py	is_handler_available	1	1	0	0	0	0.0%
openhcs/microscopes/handler_registry_service.py	(no function)	6	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler.root_dir	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler.microscope_type	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler.metadata_handler_class	1	1	0	0	0	0.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler.compatible_backends	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler._build_virtual_mapping	11	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler._flatten_zsteps	2	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler._process_files_in_directory	30	30	0	14	0	0.0%
openhcs/microscopes/imagexpress.py	ImageXpressHandler._flatten_timepoints	7	0	0	4	1	90.9%
openhcs/microscopes/imagexpress.py	ImageXpressHandler._flatten_indexed_folders	28	1	0	14	1	95.2%
openhcs/microscopes/imagexpress.py	ImageXpressFilenameParser.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressFilenameParser.can_parse	2	2	0	0	0	0.0%
openhcs/microscopes/imagexpress.py	ImageXpressFilenameParser.parse_filename	13	0	0	2	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressFilenameParser.extract_component_coordinates	7	2	0	4	2	63.6%
openhcs/microscopes/imagexpress.py	ImageXpressFilenameParser.construct_filename	25	2	0	16	4	85.4%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.__init__	2	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.find_metadata_file	18	7	0	16	6	55.9%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_grid_dimensions	28	9	0	8	4	63.9%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_pixel_size	23	7	0	12	5	60.0%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_channel_values	24	7	0	8	3	68.8%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_well_values	1	1	0	0	0	0.0%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_site_values	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_z_index_values	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	ImageXpressMetadataHandler.get_timepoint_values	1	0	0	0	0	100.0%
openhcs/microscopes/imagexpress.py	(no function)	51	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	register_metadata_handler	5	1	0	2	1	71.4%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.root_dir	0	0	13	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.microscope_type	0	0	2	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.metadata_handler_class	0	0	2	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.compatible_backends	0	0	16	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.get_required_backend	8	2	0	2	0	80.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.get_available_backends	1	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.get_primary_backend	8	5	0	4	1	33.3%
openhcs/microscopes/microscope_base.py	MicroscopeHandler._register_virtual_workspace_backend	6	0	0	2	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.initialize_workspace	5	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.post_workspace	67	32	0	26	10	50.5%
openhcs/microscopes/microscope_base.py	MicroscopeHandler._build_virtual_mapping	0	0	1	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.parse_filename	1	1	0	0	0	0.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.construct_filename	1	1	0	0	0	0.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.auto_detect_patterns	15	4	0	10	3	64.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.path_list_from_pattern	12	6	0	8	2	40.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.find_metadata_file	1	1	0	0	0	0.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.get_grid_dimensions	1	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	MicroscopeHandler.get_pixel_size	1	1	0	0	0	0.0%
openhcs/microscopes/microscope_base.py	create_microscope_handler	22	5	0	12	5	70.6%
openhcs/microscopes/microscope_base.py	validate_backend_compatibility	1	1	0	0	0	0.0%
openhcs/microscopes/microscope_base.py	_try_metadata_detection	3	0	0	0	0	100.0%
openhcs/microscopes/microscope_base.py	_auto_detect_microscope_type	22	7	0	8	3	66.7%
openhcs/microscopes/microscope_base.py	(no function)	40	0	12	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	FilenameParser.__init__	1	0	0	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	FilenameParser.can_parse	0	0	10	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	FilenameParser.parse_filename	0	0	11	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	FilenameParser.extract_component_coordinates	0	0	13	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	FilenameParser.construct_filename	0	0	19	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.__init__	1	0	0	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler._get_with_fallback	5	0	0	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.find_metadata_file	0	0	14	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_grid_dimensions	0	0	15	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_pixel_size	0	0	15	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_channel_values	0	0	11	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_well_values	0	0	11	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_site_values	0	0	11	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_z_index_values	0	0	11	0	0	100.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.get_image_files	28	28	0	10	0	0.0%
openhcs/microscopes/microscope_interfaces.py	MetadataHandler.parse_metadata	9	0	0	4	0	100.0%
openhcs/microscopes/microscope_interfaces.py	(no function)	14	0	23	0	0	100.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.__init__	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler._get_omero_conn	6	6	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler._load_plate_metadata	25	25	0	12	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.find_metadata_file	4	4	0	2	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler._extract_plate_id	7	7	0	4	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_channel_values	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_z_index_values	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_timepoint_values	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_site_values	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_well_values	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_grid_dimensions	20	20	0	12	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_pixel_size	17	17	0	8	0	0.0%
openhcs/microscopes/omero.py	OMEROMetadataHandler.get_image_files	4	4	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROFilenameParser.can_parse	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROFilenameParser.parse_filename	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROFilenameParser.construct_filename	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROFilenameParser.extract_component_coordinates	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.__init__	3	3	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.root_dir	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.microscope_type	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.metadata_handler_class	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.compatible_backends	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler._prepare_workspace	1	1	0	0	0	0.0%
openhcs/microscopes/omero.py	OMEROHandler.initialize_workspace	4	4	0	2	0	0.0%
openhcs/microscopes/omero.py	(no function)	49	44	0	0	0	10.2%
openhcs/microscopes/openhcs.py	_get_available_filename_parsers	3	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.__init__	5	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler._load_metadata	25	7	0	12	5	67.6%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.determine_main_subdirectory	12	4	0	8	2	60.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler._load_metadata_dict	10	4	0	4	2	57.1%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.find_metadata_file	14	6	0	8	2	54.5%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_grid_dimensions	4	1	0	2	1	66.7%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_pixel_size	4	1	0	2	1	66.7%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_source_filename_parser_name	4	1	0	2	1	66.7%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler._get_optional_metadata_dict	2	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_channel_values	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_well_values	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_site_values	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_z_index_values	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_timepoint_values	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_objective_values	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_plate_acquisition_datetime	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_plate_name	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler._get_optional_metadata_str	2	2	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.get_available_backends	7	2	0	2	1	66.7%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler._resolve_plate_root	6	1	0	4	2	70.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataHandler.update_available_backends	8	8	0	0	0	0.0%
openhcs/microscopes/openhcs.py	SubdirectoryKeyedMetadata.get_subdirectory_metadata	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	SubdirectoryKeyedMetadata.add_subdirectory_metadata	2	2	0	0	0	0.0%
openhcs/microscopes/openhcs.py	SubdirectoryKeyedMetadata.from_single_metadata	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	SubdirectoryKeyedMetadata.from_legacy_dict	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataGenerator.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMetadataGenerator.create_metadata	15	0	0	6	1	95.2%
openhcs/microscopes/openhcs.py	OpenHCSMetadataGenerator._extract_metadata_from_disk_state	30	16	0	12	2	42.9%
openhcs/microscopes/openhcs.py	OpenHCSMetadataGenerator._extract_component_metadata_from_files	11	0	0	8	1	94.7%
openhcs/microscopes/openhcs.py	OpenHCSMetadataGenerator._merge_component_metadata	12	0	0	6	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.__init__	6	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler._load_and_get_parser	19	9	0	6	2	56.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.parser	3	1	0	2	1	60.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.parser	3	1	0	2	1	60.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.root_dir	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.microscope_type	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.metadata_handler_class	1	1	0	0	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.compatible_backends	1	0	0	0	0	100.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.get_available_backends	14	5	0	6	1	70.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.get_primary_backend	9	2	0	6	2	73.3%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.initialize_workspace	13	1	0	4	1	88.2%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler._prepare_workspace	5	5	0	2	0	0.0%
openhcs/microscopes/openhcs.py	OpenHCSMicroscopeHandler.post_workspace	12	12	0	4	0	0.0%
openhcs/microscopes/openhcs.py	(no function)	114	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler.root_dir	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler.microscope_type	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler.metadata_handler_class	1	1	0	0	0	0.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler.compatible_backends	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler._build_virtual_mapping	44	9	0	14	5	72.4%
openhcs/microscopes/opera_phenix.py	OperaPhenixHandler._fill_missing_images	50	15	0	12	3	71.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.__init__	3	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.can_parse	2	2	0	0	0	0.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.parse_filename	16	2	0	2	1	83.3%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.parse_filename.parse_comp	3	1	0	2	1	60.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.construct_filename	25	3	0	10	3	82.9%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.remap_field_in_filename	9	9	0	4	0	0.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixFilenameParser.extract_component_coordinates	16	8	0	8	2	41.7%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.__init__	2	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.find_metadata_file	13	3	0	10	4	69.6%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_grid_dimensions	11	3	0	6	3	64.7%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_pixel_size	11	3	0	6	3	64.7%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_channel_values	20	4	0	8	3	75.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_well_values	1	1	0	0	0	0.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_site_values	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_z_index_values	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.get_timepoint_values	1	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix.py	OperaPhenixMetadataHandler.create_xml_parser	5	2	0	4	2	55.6%
openhcs/microscopes/opera_phenix.py	(no function)	50	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.__init__	9	1	0	4	1	84.6%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser._parse_xml	28	21	0	0	0	25.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_plate_info	16	16	0	8	0	0.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_grid_size	54	19	0	26	6	58.8%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_pixel_size	23	16	0	6	2	31.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_image_info	28	7	0	18	8	67.4%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_well_positions	14	14	0	8	0	0.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser._get_element_text	2	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser._get_element_attribute	2	2	0	0	0	0.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.detect_orphan_fields	25	5	0	12	2	75.7%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_field_positions	27	9	0	12	3	69.2%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.sort_fields_by_position	25	1	0	14	2	92.3%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.get_field_id_mapping	3	0	0	0	0	100.0%
openhcs/microscopes/opera_phenix_xml_parser.py	OperaPhenixXmlParser.remap_field_id	5	2	0	4	2	55.6%
openhcs/microscopes/opera_phenix_xml_parser.py	(no function)	28	0	0	0	0	100.0%
openhcs/omero/__init__.py	(no function)	4	4	0	0	0	0.0%
openhcs/processing/__init__.py	__getattr__	5	5	0	2	0	0.0%
openhcs/processing/__init__.py	(no function)	4	0	0	0	0	100.0%
openhcs/processing/backends/__init__.py	(no function)	0	0	0	0	0	100.0%
openhcs/processing/backends/analysis/__init__.py	(no function)	9	4	0	0	0	55.6%
openhcs/processing/backends/analysis/cache_utils.py	get_library_cache_path	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	save_library_metadata	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	load_library_metadata	29	29	0	8	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	clear_library_cache	8	8	0	2	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	register_functions_from_cache	24	24	0	6	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	should_use_cache_for_library	6	6	0	2	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	get_cache_status	18	18	0	6	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	run_cached_registration	7	7	0	2	0	0.0%
openhcs/processing/backends/analysis/cache_utils.py	(no function)	15	0	0	0	0	100.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	materialize_cell_counts	13	5	0	8	4	57.1%
openhcs/processing/backends/analysis/cell_counting_cpu.py	materialize_segmentation_masks	40	10	0	18	5	70.7%
openhcs/processing/backends/analysis/cell_counting_cpu.py	count_cells_single_channel	16	2	0	8	3	79.2%
openhcs/processing/backends/analysis/cell_counting_cpu.py	count_cells_multi_channel	22	22	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_materialize_single_channel_results	44	8	0	22	5	80.3%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_materialize_multi_channel_results	45	45	0	22	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_preprocess_image	5	5	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_single_method	11	6	0	10	4	42.9%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_blob_log	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_blob_dog	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_blob_doh	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_filter_by_area	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_watershed	33	3	0	12	3	82.2%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_detect_cells_threshold	22	22	0	6	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_analyze_colocalization	9	9	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_colocalization_distance_based	29	29	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_create_empty_coloc_result	1	1	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_colocalization_overlap_based	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_colocalization_intensity_based	23	23	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_colocalization_manders	11	11	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_create_segmentation_visualization	14	11	0	6	1	20.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	_create_colocalization_map	8	8	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cpu.py	(no function)	82	0	0	0	0	100.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	materialize_cell_counts	18	18	0	16	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	materialize_segmentation_masks	27	27	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	count_cells_single_channel	16	16	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	count_cells_multi_channel	22	22	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_materialize_single_channel_results	29	29	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_materialize_multi_channel_results	30	30	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_preprocess_image	5	5	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_single_method	11	11	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_blob_log	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_blob_dog	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_blob_doh	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_filter_by_area	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_watershed	33	33	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_detect_cells_threshold	22	22	0	6	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_analyze_colocalization	9	9	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_colocalization_distance_based	29	29	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_create_empty_coloc_result	1	1	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_colocalization_overlap_based	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_colocalization_intensity_based	23	23	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_colocalization_manders	11	11	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_create_segmentation_visualization	14	14	0	6	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	_create_colocalization_map	8	8	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_cupy.py	(no function)	87	1	0	2	1	97.8%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	materialize_cell_counts	18	18	0	16	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	materialize_segmentation_masks	27	27	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	count_cells_single_channel	16	16	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	count_cells_multi_channel	22	22	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_materialize_single_channel_results	28	28	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_materialize_multi_channel_results	30	30	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_preprocess_image	6	6	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_single_method	11	11	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_blob_log	35	35	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_blob_dog	36	36	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_blob_doh	42	42	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_filter_by_area	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_non_maximum_suppression_3d	23	23	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_watershed	52	52	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_detect_cells_threshold	54	54	0	12	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_analyze_colocalization	9	9	0	8	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_colocalization_distance_based	29	29	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_create_empty_coloc_result	1	1	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_colocalization_overlap_based	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_colocalization_intensity_based	23	23	0	10	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_colocalization_manders	11	11	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_create_segmentation_visualization	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	count_cells_simple_baseline	17	17	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	_create_colocalization_map	8	8	0	2	0	0.0%
openhcs/processing/backends/analysis/cell_counting_pyclesperanto.py	(no function)	79	69	0	0	0	12.7%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	extract_well_id	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	extract_analysis_type	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	create_metaxpress_header	14	14	0	6	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	save_with_metaxpress_header	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	auto_summarize_column	33	33	0	20	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	summarize_analysis_file	27	27	0	12	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	consolidate_analysis_results	90	90	0	46	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	materialize_consolidated_results	10	10	0	2	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	consolidate_analysis_results_pipeline	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/consolidate_analysis_results.py	(no function)	23	1	0	2	1	92.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	materialize_consolidated_summary	13	13	0	4	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	materialize_detailed_report	31	31	0	12	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	extract_well_id	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	detect_aggregation_strategy	8	8	0	6	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	aggregate_series	10	10	0	6	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	consolidate_special_outputs	68	68	0	30	0	0.0%
openhcs/processing/backends/analysis/consolidate_special_outputs.py	(no function)	28	0	0	0	0	100.0%
openhcs/processing/backends/analysis/cx5_format.py	read_results	8	8	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	get_features	6	6	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	is_N_row	7	7	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	is_well_all_replicates_row	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	is_well_specific_replicate_row	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	read_plate_layout	76	76	0	52	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	read_plate_layout.sanitize_compare	9	9	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	get_features_EDDU_CX5	1	1	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	get_features_EDDU_metaxpress	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_well_dict	9	9	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	add_well_to_well_dict	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_plates_dict	6	6	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_plates_dict_EDDU_metaxpress	3	3	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_plates_dict_EDDU_CX5	3	3	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	indices_to_well	9	9	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	row_col_to_well	3	3	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	well_to_num	9	9	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	fill_plates_dict	7	7	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	fill_plates_dict_EDDU_CX5	5	5	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	fill_plates_dict_EDDU_metaxpress	14	14	0	12	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_plates	10	10	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_plates_all_replicates	5	5	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_plates_duplicate_rows	8	8	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_rows	14	14	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	get_well_next_row	1	1	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_plates	10	10	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_plates_one_replicate	6	6	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	load_plate_groups	9	9	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	normalize_plate	14	14	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	normalize_all_plates	5	5	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_table_for_feature	21	21	0	10	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_all_feature_tables	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	feature_tables_to_excel	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	feature_tables_to_excel.remove_inval_chars	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_duplicate_wells	7	7	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	make_experiment_dict_locations	5	5	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	make_experiment_dict_values	7	7	0	6	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	average_wells	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	location_to_value	4	4	0	0	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	normalize_experiment	15	15	0	10	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	write_values_heat_map	16	16	0	8	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	create_reference_wells	7	7	0	4	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	remove_inval_chars	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/cx5_format.py	(no function)	71	69	0	6	0	2.6%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	_RegistrationCNN_torch.__init__	5	5	0	0	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	_RegistrationCNN_torch.forward	5	5	0	0	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	_rasterize_polygons_slice_torch	42	42	0	20	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	_apply_displacement_field_torch	10	10	0	2	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	_smooth_field_z_torch	16	16	0	2	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	dxf_mask_pipeline	8	8	0	4	0	0.0%
openhcs/processing/backends/analysis/dxf_mask_pipeline.py	(no function)	38	7	0	10	5	75.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.normalized_variance	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.laplacian_energy	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.tenengrad_variance	5	5	0	0	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.adaptive_fft_focus	9	9	0	0	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.combined_focus_measure	8	8	0	2	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer._get_focus_function	13	13	0	12	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.find_best_focus	12	12	0	6	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.select_best_focus	3	3	0	0	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	FocusAnalyzer.compute_focus_metrics	9	9	0	4	0	0.0%
openhcs/processing/backends/analysis/focus_analyzer.py	(no function)	26	0	0	0	0	100.0%
openhcs/processing/backends/analysis/hmm_axon.py	materialize_hmm_analysis	28	28	0	10	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	materialize_trace_visualizations	22	22	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	normalize	4	4	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	boundary_masking_canny	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	boundary_masking_threshold	8	8	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	boundary_masking_blob	13	13	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	random_seed_by_edge_map	7	7	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	generate_random_seeds	4	4	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	generate_seeds_by_method	11	11	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	get_growth_cone_positions	10	10	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	selected_seeding	9	9	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	euclidian_distance	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	extract_graph	8	8	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	graph_to_length	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	create_overlay_from_graph	10	10	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	create_visualization_array	15	15	0	12	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	trace_neurites_rrs_alva	19	19	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	_compile_hmm_analysis_results	14	14	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon.py	process_file_legacy	0	0	1	0	0	100.0%
openhcs/processing/backends/analysis/hmm_axon.py	(no function)	47	35	0	0	0	25.5%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	materialize_hmm_analysis	26	26	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	materialize_trace_visualizations	23	23	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	normalize	4	4	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	boundary_masking_canny	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	boundary_masking_threshold	8	8	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	boundary_masking_blob	13	13	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	random_seed_by_edge_map	7	7	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	generate_random_seeds	4	4	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	generate_seeds_by_method	11	11	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	get_growth_cone_positions	10	10	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	selected_seeding	9	9	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	selected_seeding_torbi	10	10	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	euclidian_distance	2	2	0	0	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	extract_graph	8	8	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	graph_to_length	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	create_overlay_from_graph	10	10	0	6	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	create_visualization_array	15	15	0	12	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	trace_neurites_rrs_alva_torbi	20	20	0	8	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	_compile_hmm_analysis_results	14	14	0	2	0	0.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	process_file_legacy	0	0	1	0	0	100.0%
openhcs/processing/backends/analysis/hmm_axon_torbi.py	(no function)	51	34	0	0	0	33.3%
openhcs/processing/backends/analysis/multi_template_matching.py	materialize_mtm_match_results	37	37	0	18	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	multi_template_crop_reference_channel	43	43	0	22	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	multi_template_crop_subset	30	30	0	18	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	multi_template_crop	44	44	0	18	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	_create_rotated_templates	9	9	0	4	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	_rotate_image	12	12	0	2	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	_process_single_slice	36	36	0	14	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	_stack_with_padding	14	14	0	6	0	0.0%
openhcs/processing/backends/analysis/multi_template_matching.py	(no function)	39	3	0	0	0	92.3%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	Encoder3D.__init__	6	6	0	0	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	Encoder3D.forward	9	9	0	2	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	Decoder3D.__init__	10	10	0	0	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	Decoder3D.forward	5	5	0	0	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	_extract_random_patches	9	9	0	2	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	_affine_augment_patch	7	7	0	2	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	_nt_xent_loss	13	13	0	0	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	_kmeans_torch	16	16	0	10	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	self_supervised_segmentation_3d	86	86	0	34	0	0.0%
openhcs/processing/backends/analysis/self_supervised_segmentation_3d.py	(no function)	22	0	0	0	0	100.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	materialize_axon_analysis	34	34	0	10	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	materialize_skeleton_visualizations	22	22	0	8	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	skan_axon_skeletonize_and_analyze	30	30	0	16	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_segment_axons	17	17	0	10	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_remove_small_objects	11	11	0	4	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_skeletonize_3d	7	7	0	0	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_create_empty_branch_dataframe	4	4	0	2	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_analyze_3d_skeleton	11	11	0	2	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_analyze_2d_slices	21	21	0	8	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_create_output_array_2d	19	19	0	10	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_create_output_array	19	19	0	10	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_compile_analysis_results	7	7	0	0	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_compute_summary_metrics	16	16	0	2	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	_get_skan_version	5	5	0	0	0	0.0%
openhcs/processing/backends/analysis/skan_axon_analysis.py	(no function)	38	0	0	0	0	100.0%
openhcs/processing/backends/analysis/straighten_object_3d.py	_moving_average_1d_torch	10	10	0	4	0	0.0%
openhcs/processing/backends/analysis/straighten_object_3d.py	straighten_object_3d	149	149	1	44	0	0.0%
openhcs/processing/backends/analysis/straighten_object_3d.py	(no function)	11	0	0	0	0	100.0%
openhcs/processing/backends/assemblers/__init__.py	(no function)	3	0	0	0	0	100.0%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	_get_all_overlapping_pairs	34	1	0	16	3	92.0%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	_create_fixed_blend_mask	15	0	0	8	0	100.0%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	_create_dynamic_blend_mask	21	21	0	16	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	assemble_stack_cpu	86	24	0	40	13	65.9%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	to_numpy	9	9	0	8	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cpu.py	(no function)	18	2	0	2	1	85.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	_get_all_overlapping_pairs_gpu	60	60	0	18	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	_create_batch_fixed_masks_gpu	23	23	0	14	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	_create_batch_dynamic_masks_gpu	23	23	0	18	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	_create_dynamic_blend_mask_gpu	21	21	0	16	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	_create_gaussian_blend_mask	1	1	0	0	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	assemble_stack_cupy	105	105	0	40	0	0.0%
openhcs/processing/backends/assemblers/assemble_stack_cupy.py	(no function)	29	7	0	6	3	71.4%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	FeatureEncoder.__init__	12	12	0	2	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	FeatureEncoder.forward	8	8	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	HomographyPredictionNet.__init__	6	6	0	4	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	HomographyPredictionNet.forward	15	15	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	barlow_twins_loss	8	8	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	geometry_consistency_loss	4	4	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	photometric_loss	1	1	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	warp_tile_homography	16	16	0	0	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	get_adjacency_from_layout	15	15	0	14	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	optimize_pose_graph	8	8	0	6	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	self_supervised_stitcher_func	150	150	0	48	0	0.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	plot_layout	0	0	30	0	0	100.0%
openhcs/processing/backends/assemblers/self_supervised_stitcher.py	(no function)	24	0	48	0	0	100.0%
openhcs/processing/backends/enhance/__init__.py	(no function)	39	20	0	2	1	48.8%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_validate_cupy_array	4	4	0	4	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_low_rank_approximation	13	13	0	2	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_chunked_low_rank_approximation	64	64	0	8	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_soft_threshold	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	basic_flatfield_correction_cupy	26	26	0	4	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_gpu_flatfield_correction	74	74	0	38	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	basic_flatfield_correction_batch_cupy	15	15	0	10	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	_cpu_fallback_flatfield_correction	55	55	0	6	0	0.0%
openhcs/processing/backends/enhance/basic_processor_cupy.py	(no function)	21	1	0	4	2	88.0%
openhcs/processing/backends/enhance/basic_processor_jax.py	_validate_jax_array	4	4	0	4	0	0.0%
openhcs/processing/backends/enhance/basic_processor_jax.py	basic_flatfield_correction_jax	17	17	0	2	0	0.0%
openhcs/processing/backends/enhance/basic_processor_jax.py	basic_flatfield_correction_batch_jax	18	18	0	10	0	0.0%
openhcs/processing/backends/enhance/basic_processor_jax.py	(no function)	21	2	0	4	2	84.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	_validate_numpy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	_low_rank_approximation	4	4	0	0	0	0.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	_soft_threshold	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	basic_flatfield_correction_numpy	38	38	0	22	0	0.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	basic_flatfield_correction_batch_numpy	15	15	0	10	0	0.0%
openhcs/processing/backends/enhance/basic_processor_numpy.py	(no function)	13	0	0	0	0	100.0%
openhcs/processing/backends/enhance/cupy_clahe.py	clahe_2d	20	20	0	10	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_clahe_2d_vectorized	29	29	0	14	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_compute_tile_cdfs_2d	18	18	0	6	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_apply_vectorized_interpolation_2d	30	30	0	0	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_clip_histogram_optimized	23	23	0	12	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	clahe_3d	20	20	0	10	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_clahe_3d_vectorized	28	28	0	6	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_compute_tile_cdfs_3d	20	20	0	8	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_apply_vectorized_trilinear_interpolation	51	51	0	2	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_clahe_3d_chunked	18	18	0	2	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	_fill_3d_boundaries	14	14	0	14	0	0.0%
openhcs/processing/backends/enhance/cupy_clahe.py	(no function)	24	0	0	4	2	92.9%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	laplacian_filter_torch	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	extract_patches_2d_from_3d_stack	6	6	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	blend_patches_to_2d_image	19	19	0	6	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	UNetLite.__init__	12	12	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	UNetLite.forward	5	5	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	sharpness_loss_fn	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	consistency_loss_fn	3	3	0	0	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	dl_edof_unsupervised	68	68	0	24	0	0.0%
openhcs/processing/backends/enhance/dl_edof_unsupervised.py	(no function)	22	3	0	2	1	83.3%
openhcs/processing/backends/enhance/focus_torch.py	laplacian	16	16	0	10	0	0.0%
openhcs/processing/backends/enhance/focus_torch.py	focus_stack_max_sharpness	29	29	0	12	0	0.0%
openhcs/processing/backends/enhance/focus_torch.py	(no function)	9	0	0	0	0	100.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_validate_jax_array	6	6	0	6	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_rescale_to_unit_range	7	7	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_rescale_to_unit_range.rescale_normal	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_rescale_to_unit_range.return_zeros	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_ixs	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_vmap_2d	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_nlm_core	12	12	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_nlm_core.compute	10	10	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_nlm_core.compute._compare	6	6	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	_nlm_core.compute.compare	4	4	0	0	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	non_local_means_denoise_jax	32	32	1	16	0	0.0%
openhcs/processing/backends/enhance/jax_nlm_processor.py	(no function)	19	0	0	0	0	100.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	BlurPool2d.__init__	14	14	0	2	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	BlurPool2d.forward	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	N2V2UNet.__init__	21	21	0	2	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	N2V2UNet._conv_block	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	N2V2UNet.forward	21	21	0	0	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	vectorized_median_replacement	8	8	0	0	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	extract_patches_vectorized	13	13	0	2	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	generate_masks_vectorized	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	process_large_slice	28	28	0	8	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	n2v2_denoise_torch	62	62	0	20	0	0.0%
openhcs/processing/backends/enhance/n2v2_processor_torch.py	(no function)	23	0	0	0	0	100.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_Simple2DCNN_torch.__init__	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_Simple2DCNN_torch.forward	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_LearnedBlur2D_torch.__init__	6	6	0	2	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_LearnedBlur2D_torch.forward	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_gaussian_kernel_2d_torch	6	6	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_blur_fft_2d_torch	9	9	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	_extract_random_patches_2d_torch	9	9	0	2	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	self_supervised_2d_deconvolution	75	75	0	38	0	0.0%
openhcs/processing/backends/enhance/self_supervised_2d_deconvolution.py	(no function)	25	1	0	2	1	92.6%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_Simple3DCNN_torch.__init__	2	2	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_Simple3DCNN_torch.forward	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_LearnedBlur3D_torch.__init__	6	6	0	2	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_LearnedBlur3D_torch.forward	1	1	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_gaussian_kernel_3d_torch	8	8	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_blur_fft_torch	9	9	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_blur_gaussian_conv_torch	7	7	0	0	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	_extract_random_patches_torch	10	10	0	2	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	self_supervised_3d_deconvolution	78	78	0	38	0	0.0%
openhcs/processing/backends/enhance/self_supervised_3d_deconvolution.py	(no function)	26	1	0	2	1	92.9%
openhcs/processing/backends/enhance/torch_nlm_processor.py	_validate_3d_array	6	6	0	6	0	0.0%
openhcs/processing/backends/enhance/torch_nlm_processor.py	non_local_means_denoise_torch	24	24	0	10	0	0.0%
openhcs/processing/backends/enhance/torch_nlm_processor.py	(no function)	16	2	0	2	1	83.3%
openhcs/processing/backends/experimental_analysis/__init__.py	(no function)	4	0	0	0	0	100.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry.extract_features	8	8	0	2	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry.extract_plate_names	10	10	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry.create_plates_dict	12	12	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry.fill_plates_dict	14	14	0	8	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry._generate_well_ids	7	7	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	CX5FormatRegistry._row_col_to_well	12	12	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/cx5_registry.py	(no function)	14	0	0	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.__init__	1	1	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.format_name	1	1	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.extract_features	0	0	13	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.extract_plate_names	0	0	13	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.create_plates_dict	0	0	13	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.fill_plates_dict	0	0	14	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.read_results	10	10	0	6	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.process_data	6	6	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	MicroscopeFormatRegistryBase.validate_data_structure	9	9	0	8	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry.py	(no function)	29	0	8	0	0	100.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService._discover_registries	4	4	0	2	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.get_all_format_registries	1	1	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.get_registry_class_for_format	5	5	0	2	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.get_registry_instance_for_format	6	6	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.detect_format_from_file	19	19	0	8	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.get_supported_formats	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.get_supported_extensions	6	6	0	2	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	FormatRegistryService.clear_cache	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/format_registry_service.py	(no function)	22	0	0	0	0	100.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	MetaXpressFormatRegistry.extract_features	11	11	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	MetaXpressFormatRegistry.extract_plate_names	11	11	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	MetaXpressFormatRegistry.create_plates_dict	12	12	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	MetaXpressFormatRegistry.fill_plates_dict	27	27	0	16	0	0.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	MetaXpressFormatRegistry._generate_well_ids	7	7	0	4	0	0.0%
openhcs/processing/backends/experimental_analysis/metaxpress_registry.py	(no function)	13	0	0	0	0	100.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine.__init__	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine.run_analysis	21	21	0	6	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._determine_format	10	10	0	6	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._parse_experiment_config	9	9	0	2	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._read_plate_layout	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._load_plate_groups	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._make_experiment_dict_locations	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._make_experiment_dict_values	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._normalize_experiment	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._create_all_feature_tables	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._export_results	2	2	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	ExperimentalAnalysisEngine._export_heatmaps	1	1	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	run_experimental_analysis	4	4	0	0	0	0.0%
openhcs/processing/backends/experimental_analysis/unified_analysis_engine.py	(no function)	19	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.__init__	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.get_library_version	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.is_library_available	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.get_library_object	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.get_module_patterns	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry.get_display_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._create_array	4	4	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._check_first_parameter	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._preprocess_input	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._postprocess_output	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._generate_function_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._generate_tags	3	3	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._stack_2d_results	2	2	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	CupyRegistry._arrays_close	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/cupy_registry.py	(no function)	29	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.__init__	2	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._get_openhcs_modules	17	2	0	6	2	82.6%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_modules_to_scan	8	2	0	2	0	80.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_library_version	5	2	0	0	0	60.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.is_library_available	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_library_object	2	2	0	0	0	0.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_memory_type	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_display_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.get_module_patterns	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry.discover_functions	29	2	0	10	1	92.3%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._generate_function_name	11	3	0	4	2	66.7%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._generate_tags	10	10	0	8	0	0.0%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._is_function_backend_available	10	5	0	8	2	38.9%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._check_backend_availability	18	10	0	6	0	41.7%
openhcs/processing/backends/lib_registry/openhcs_registry.py	OpenHCSRegistry._extract_function_docstring	17	3	0	12	5	72.4%
openhcs/processing/backends/lib_registry/openhcs_registry.py	(no function)	26	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry.__init__	4	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry.get_library_version	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry.is_library_available	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry.get_library_object	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry.get_module_patterns	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._create_array	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._check_first_parameter	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._preprocess_input	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._postprocess_output	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._convert_input_dtype	5	5	0	4	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._convert_output_dtype	7	7	0	8	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._stack_2d_results	2	2	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	PyclesperantoRegistry._arrays_close	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/pyclesperanto_registry.py	(no function)	27	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/registry_service.py	RegistryService.get_all_functions_with_metadata	25	3	0	8	0	90.9%
openhcs/processing/backends/lib_registry/registry_service.py	RegistryService.clear_metadata_cache	2	2	0	0	0	0.0%
openhcs/processing/backends/lib_registry/registry_service.py	(no function)	13	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.__init__	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.get_library_version	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.is_library_available	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.get_library_object	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.get_module_patterns	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry.get_display_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._create_array	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._check_first_parameter	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._preprocess_input	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._postprocess_output	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._generate_function_name	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._stack_2d_results	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	SkimageRegistry._arrays_close	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/scikit_image_registry.py	(no function)	26	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	ModuleFilterComponents.should_skip	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	ProcessingContract.execute	2	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	FunctionMetadata.get_memory_type	7	7	0	6	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	FunctionMetadata.get_registry_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.__init__	2	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_library_version	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.is_library_available	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.discover_functions	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.apply_contract_wrapper	24	1	0	10	1	94.1%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.apply_contract_wrapper.wrapper	4	1	0	4	1	75.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._inject_optional_dataclass_params	35	32	0	14	1	8.2%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._inject_optional_dataclass_params.enhanced_wrapper	2	2	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._get_function_by_name	2	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._execute_slice_by_slice	8	8	0	2	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._execute_pure_3d	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._execute_pure_2d	4	4	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._execute_flexible	4	1	0	2	1	66.7%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._execute_volumetric_to_slice	3	3	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._load_or_discover_functions	9	0	0	2	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._load_from_cache	40	9	0	12	3	76.9%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase._save_to_cache	5	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_memory_type	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_module_patterns	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_display_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_modules_to_scan	9	2	0	4	1	76.9%
openhcs/processing/backends/lib_registry/unified_registry.py	LibraryRegistryBase.get_library_object	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.create_test_arrays	3	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._create_array	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._get_float_dtype	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.classify_function_behavior	10	1	0	2	1	83.3%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.classify_function_behavior.test_function	5	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._classify_dual_support	8	1	0	8	1	87.5%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._stack_2d_results	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._arrays_close	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.create_library_adapter	16	1	0	4	2	85.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.create_library_adapter.adapter	3	3	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._enhance_annotations_from_docstring	24	2	0	10	2	88.2%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._preprocess_input	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._postprocess_output	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.should_include_function	16	4	0	12	4	71.4%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._validate_type_hints	9	5	0	0	0	44.4%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._check_first_parameter	0	0	2	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase.discover_functions	42	0	0	12	1	98.1%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._get_full_function_path	7	2	0	4	2	63.6%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._get_rejection_reason	17	5	0	10	3	70.4%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._generate_function_name	1	1	0	0	0	0.0%
openhcs/processing/backends/lib_registry/unified_registry.py	RuntimeTestingRegistryBase._generate_tags	1	0	0	0	0	100.0%
openhcs/processing/backends/lib_registry/unified_registry.py	(no function)	76	0	20	0	0	100.0%
openhcs/processing/backends/pos_gen/__init__.py	(no function)	0	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	warn_data	1	1	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	Intersection.__init__	3	0	0	2	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	Intersection._calculate	18	0	0	2	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	_get_window	4	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ashlar_register_no_preprocessing	50	16	0	18	8	64.7%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ashlar_nccw_no_preprocessing	29	8	0	18	7	68.1%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ashlar_crop	15	2	0	4	2	78.9%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.__init__	13	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner._build_neighbors_graph	7	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.run	6	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.check_overlaps	6	2	0	4	2	60.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.compute_threshold	43	7	0	22	4	80.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.register_all	12	3	0	10	2	77.3%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.register_pair	23	2	0	6	0	93.1%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner._register	8	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.intersection	5	0	0	2	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.crop	2	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.overlap	4	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.build_spanning_tree	12	0	0	4	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.calculate_positions	14	1	1	6	1	90.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ArrayEdgeAligner.fit_model	17	3	0	4	1	81.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	_calculate_initial_positions	11	0	0	2	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	_convert_ashlar_positions_to_openhcs	5	0	0	2	0	100.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	ashlar_compute_tile_positions_cpu	24	12	0	2	0	46.2%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	materialize_ashlar_cpu_positions	22	22	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_cpu.py	(no function)	47	1	0	2	1	95.9%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	warn_data	1	1	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	IntersectionGPU.__init__	7	7	0	6	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	IntersectionGPU._calculate	10	10	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	_get_window	6	6	0	2	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	whiten_gpu	9	9	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	whiten_gpu_vectorized	13	13	0	8	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ashlar_register_gpu	30	30	0	16	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ashlar_nccw_no_preprocessing_gpu	24	24	0	12	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ashlar_crop_gpu	19	19	0	12	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.__init__	23	23	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU._build_neighbors_graph	9	9	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.run	6	6	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.check_overlaps	12	12	0	8	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.compute_threshold	52	52	0	28	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.register_all	13	13	0	10	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.register_pair	40	40	0	16	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU._register	17	17	0	6	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.intersection	7	7	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.crop	2	2	0	0	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.overlap	6	6	0	2	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.build_spanning_tree	34	34	0	8	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.calculate_positions	14	14	1	6	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ArrayEdgeAlignerGPU.fit_model	21	21	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	_calculate_initial_positions_gpu	13	13	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	_convert_ashlar_positions_to_openhcs_gpu	7	7	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	ashlar_compute_tile_positions_gpu	36	36	0	12	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	materialize_ashlar_gpu_positions	22	22	0	4	0	0.0%
openhcs/processing/backends/pos_gen/ashlar_main_gpu.py	(no function)	54	2	0	4	2	93.1%
openhcs/processing/backends/pos_gen/mist/__init__.py	(no function)	2	0	0	0	0	100.0%
openhcs/processing/backends/pos_gen/mist/boruvka_mst.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/boruvka_mst.py	_validate_mst_inputs	13	13	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/boruvka_mst.py	build_mst_gpu_boruvka	42	42	0	10	0	0.0%
openhcs/processing/backends/pos_gen/mist/boruvka_mst.py	(no function)	10	1	0	2	1	83.3%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	_reset_and_flatten_kernel	8	8	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	_find_minimum_edges_kernel	15	15	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	_union_components_kernel	29	29	0	16	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	launch_reset_flatten_kernel	3	3	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	launch_find_minimum_edges_kernel	3	3	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	launch_union_components_kernel	3	3	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	gpu_component_count	2	2	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/gpu_kernels.py	(no function)	17	1	0	2	1	89.5%
openhcs/processing/backends/pos_gen/mist/mist_main.py	_convert_overlap_to_tile_coordinates	10	10	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/mist_main.py	_validate_displacement_magnitude	15	15	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/mist_main.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/mist_main.py	_global_optimization_gpu_only	152	152	0	54	0	0.0%
openhcs/processing/backends/pos_gen/mist/mist_main.py	mist_compute_tile_positions	104	104	0	42	0	0.0%
openhcs/processing/backends/pos_gen/mist/mist_main.py	(no function)	21	1	0	2	1	91.3%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	constrained_hill_climbing	28	28	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	phase_correlation_gpu_only	48	48	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	phase_correlation_nist_gpu	30	30	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	_find_multiple_peaks_gpu	23	23	0	12	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	_test_fft_interpretations	23	23	0	20	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	_compute_interpretation_quality	31	31	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/phase_correlation.py	(no function)	13	1	0	2	1	86.7%
openhcs/processing/backends/pos_gen/mist/position_reconstruction.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/position_reconstruction.py	rebuild_positions_from_mst_gpu	40	40	0	14	0	0.0%
openhcs/processing/backends/pos_gen/mist/position_reconstruction.py	build_mst_gpu	2	2	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/position_reconstruction.py	(no function)	9	1	0	2	1	81.8%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	compute_correlation_quality_gpu	16	16	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	compute_correlation_quality_gpu_aligned	35	35	0	10	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	compute_adaptive_threshold	10	10	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	estimate_stage_parameters	5	5	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	compute_adaptive_quality_threshold	9	9	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	validate_translation_consistency	11	11	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	debug_phase_correlation_matrix	19	19	0	4	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	log_coordinate_transformation	4	4	0	0	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	benchmark_phase_correlation_methods	25	25	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist/quality_metrics.py	(no function)	17	1	0	2	1	89.5%
openhcs/processing/backends/pos_gen/mist_processor_cupy.py	_validate_cupy_array	2	2	0	2	0	0.0%
openhcs/processing/backends/pos_gen/mist_processor_cupy.py	phase_correlation_gpu_only	44	44	0	8	0	0.0%
openhcs/processing/backends/pos_gen/mist_processor_cupy.py	(no function)	12	1	0	2	1	85.7%
openhcs/processing/backends/processors/__init__.py	(no function)	7	0	0	0	0	100.0%
openhcs/processing/backends/processors/cupy_processor.py	create_linear_weight_mask	16	16	0	4	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	_validate_3d_array	4	4	0	4	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	sharpen	14	14	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	percentile_normalize	4	4	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	stack_percentile_normalize	4	4	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	create_composite	28	28	0	10	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	apply_mask	13	13	0	8	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	max_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	mean_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	spatial_bin_2d	23	23	0	14	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	spatial_bin_3d	25	25	0	14	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	stack_equalize_histogram	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	create_projection	6	6	0	4	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	crop	13	13	0	6	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	_create_disk_cupy	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	_resize_cupy_better_match	19	19	0	14	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	tophat	13	13	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	_get_sobel_2d_kernel	5	5	0	4	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	sobel_2d_vectorized	11	11	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	sobel_3d_voxel	7	7	0	0	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	sobel_components	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	edge_magnitude	6	6	0	4	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	sobel	3	3	0	2	0	0.0%
openhcs/processing/backends/processors/cupy_processor.py	(no function)	65	4	0	6	3	90.1%
openhcs/processing/backends/processors/jax_processor.py	create_linear_weight_mask	16	16	0	4	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	_validate_3d_array	4	4	0	4	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	_gaussian_kernel	7	7	0	2	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	_gaussian_blur	8	8	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	sharpen	18	18	0	6	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	percentile_normalize	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	percentile_normalize.normalize_single_slice	8	8	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	percentile_normalize.normalize_single_slice.normalize_slice	5	5	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	percentile_normalize.normalize_single_slice.return_constant	2	2	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	stack_percentile_normalize	9	9	0	2	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	create_composite	20	20	0	8	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	apply_mask	15	15	0	10	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	max_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	mean_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	stack_equalize_histogram	11	11	0	0	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	create_projection	6	6	0	4	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	tophat	7	7	0	2	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	tophat.process_slice	35	35	0	10	0	0.0%
openhcs/processing/backends/processors/jax_processor.py	(no function)	38	0	0	0	0	100.0%
openhcs/processing/backends/processors/numpy_processor.py	create_linear_weight_mask	16	16	0	4	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	_validate_3d_array	4	2	0	4	2	50.0%
openhcs/processing/backends/processors/numpy_processor.py	sharpen	11	11	0	2	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	percentile_normalize	4	4	0	0	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	stack_percentile_normalize	4	0	0	0	0	100.0%
openhcs/processing/backends/processors/numpy_processor.py	create_composite	20	6	0	8	2	57.1%
openhcs/processing/backends/processors/numpy_processor.py	apply_mask	14	14	0	10	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	max_projection	3	0	0	0	0	100.0%
openhcs/processing/backends/processors/numpy_processor.py	mean_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	spatial_bin_2d	23	23	0	14	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	spatial_bin_3d	25	25	0	14	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	stack_equalize_histogram	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	create_projection	6	3	0	4	1	40.0%
openhcs/processing/backends/processors/numpy_processor.py	crop	13	13	0	6	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	tophat	12	12	0	2	0	0.0%
openhcs/processing/backends/processors/numpy_processor.py	(no function)	40	0	0	0	0	100.0%
openhcs/processing/backends/processors/percentile_utils.py	get_dtype_range	22	22	0	20	0	0.0%
openhcs/processing/backends/processors/percentile_utils.py	resolve_target_range	7	5	0	6	1	23.1%
openhcs/processing/backends/processors/percentile_utils.py	percentile_normalize_core	14	7	0	8	2	40.9%
openhcs/processing/backends/processors/percentile_utils.py	slice_percentile_normalize_core	12	12	0	6	0	0.0%
openhcs/processing/backends/processors/percentile_utils.py	(no function)	6	0	0	0	0	100.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	_check_pyclesperanto_available	2	2	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	_validate_3d_array	2	2	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	_gpu_minmax_normalize_range	4	4	0	0	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	per_slice_minmax_normalize	20	20	0	8	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	stack_minmax_normalize	13	13	0	4	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	sharpen	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	max_projection	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	mean_projection	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	create_projection	8	8	0	6	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	tophat	15	15	0	4	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	apply_mask	17	17	0	12	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	create_composite	25	25	0	14	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	equalize_histogram_3d	6	6	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	equalize_histogram_per_slice	10	10	0	4	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	stack_equalize_histogram	1	1	0	0	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	percentile_normalize	1	1	0	0	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	stack_percentile_normalize	1	1	0	0	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	create_linear_weight_mask	29	29	0	8	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/pyclesperanto_processor.py	(no function)	50	5	0	2	1	88.5%
openhcs/processing/backends/processors/tensorflow_processor.py	create_linear_weight_mask	16	16	0	4	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	_validate_3d_array	4	4	0	4	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	_gaussian_blur	6	6	0	2	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	sharpen	18	18	0	6	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	percentile_normalize	20	20	0	4	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	stack_percentile_normalize	19	19	0	2	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	create_composite	46	46	0	36	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	apply_mask	15	15	0	10	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	max_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	mean_projection	3	3	0	0	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	stack_equalize_histogram	10	10	0	2	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	create_projection	6	6	0	4	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	tophat	33	33	0	2	0	0.0%
openhcs/processing/backends/processors/tensorflow_processor.py	(no function)	44	4	0	4	1	85.4%
openhcs/processing/backends/processors/torch_processor.py	create_linear_weight_mask	18	18	0	6	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	_validate_3d_array	6	6	0	6	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	_gaussian_blur	13	13	0	2	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	sharpen	18	18	0	6	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	percentile_normalize	25	25	0	6	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	stack_percentile_normalize	21	21	0	4	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	create_composite	38	38	0	28	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	apply_mask	14	14	0	10	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	create_weight_mask	4	4	0	2	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	max_projection	8	8	0	2	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	mean_projection	6	6	0	0	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	stack_equalize_histogram	17	17	0	4	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	create_projection	6	6	0	4	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	tophat	34	34	0	2	0	0.0%
openhcs/processing/backends/processors/torch_processor.py	(no function)	40	4	0	2	1	88.1%
openhcs/processing/func_registry.py	_create_virtual_modules	31	0	0	22	3	94.3%
openhcs/processing/func_registry.py	_auto_initialize_registry	23	4	0	10	2	81.8%
openhcs/processing/func_registry.py	initialize_registry	20	20	0	10	0	0.0%
openhcs/processing/func_registry.py	load_prebuilt_registry	6	6	0	0	0	0.0%
openhcs/processing/func_registry.py	_scan_and_register_functions	22	22	0	10	0	0.0%
openhcs/processing/func_registry.py	_apply_unified_decoration	28	28	0	18	0	0.0%
openhcs/processing/func_registry.py	register_function	15	15	0	10	0	0.0%
openhcs/processing/func_registry.py	_apply_cpu_only_filtering	8	1	0	8	2	81.2%
openhcs/processing/func_registry.py	_register_function	6	6	0	2	0	0.0%
openhcs/processing/func_registry.py	get_functions_by_memory_type	19	19	0	16	0	0.0%
openhcs/processing/func_registry.py	get_function_info	3	3	0	2	0	0.0%
openhcs/processing/func_registry.py	is_registry_initialized	2	2	0	0	0	0.0%
openhcs/processing/func_registry.py	get_valid_memory_types	1	1	0	0	0	0.0%
openhcs/processing/func_registry.py	get_function_by_name	5	5	0	4	0	0.0%
openhcs/processing/func_registry.py	get_all_function_names	2	2	0	0	0	0.0%
openhcs/processing/func_registry.py	(no function)	36	0	0	0	0	100.0%
openhcs/processing/presets/__init__.py	(no function)	1	1	0	0	0	0.0%
openhcs/pyqt_gui/__init__.py	(no function)	5	5	0	0	0	0.0%
openhcs/pyqt_gui/__main__.py	main	14	14	0	2	0	0.0%
openhcs/pyqt_gui/__main__.py	(no function)	2	2	2	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.__init__	11	11	0	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.setup_application	19	19	0	2	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.setup_application.init_storage_registry_background	3	3	0	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.setup_application.init_function_registry_background	3	3	0	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.create_main_window	4	4	0	2	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.show_main_window	7	7	0	2	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.on_config_changed	2	2	0	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.handle_exception	8	8	0	4	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.run	9	9	0	0	0	0.0%
openhcs/pyqt_gui/app.py	OpenHCSPyQtApp.cleanup	14	14	0	4	0	0.0%
openhcs/pyqt_gui/app.py	(no function)	20	20	3	0	0	0.0%
openhcs/pyqt_gui/config.py	PerformanceMonitorConfig.__post_init__	6	6	0	6	0	0.0%
openhcs/pyqt_gui/config.py	PerformanceMonitorConfig.update_interval_seconds	1	1	0	0	0	0.0%
openhcs/pyqt_gui/config.py	PerformanceMonitorConfig.calculated_max_data_points	3	3	0	2	0	0.0%
openhcs/pyqt_gui/config.py	get_default_pyqt_gui_config	2	2	0	0	0	0.0%
openhcs/pyqt_gui/config.py	create_high_performance_config	1	1	0	0	0	0.0%
openhcs/pyqt_gui/config.py	create_low_resource_config	1	1	0	0	0	0.0%
openhcs/pyqt_gui/config.py	(no function)	117	117	0	0	0	0.0%
openhcs/pyqt_gui/launch.py	is_wsl	4	4	0	0	0	0.0%
openhcs/pyqt_gui/launch.py	setup_qt_platform	26	26	0	12	0	0.0%
openhcs/pyqt_gui/launch.py	setup_logging	21	21	0	2	0	0.0%
openhcs/pyqt_gui/launch.py	parse_arguments	7	7	0	0	0	0.0%
openhcs/pyqt_gui/launch.py	load_configuration	11	11	0	2	0	0.0%
openhcs/pyqt_gui/launch.py	check_dependencies	22	22	0	4	0	0.0%
openhcs/pyqt_gui/launch.py	main	29	29	0	4	0	0.0%
openhcs/pyqt_gui/launch.py	(no function)	21	21	2	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.__init__	16	16	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._deferred_initialization	3	3	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.setup_ui	11	11	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.apply_initial_theme	3	3	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.on_theme_changed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.setup_dock_system	1	1	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.create_floating_windows	1	1	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_default_windows	1	1	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_plate_manager	24	24	0	6	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_pipeline_editor	14	14	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_image_browser	22	22	0	8	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_image_browser.on_plate_selected	4	4	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._initialize_log_viewer	10	10	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_log_viewer	6	6	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_zmq_server_manager	16	16	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._open_log_file_in_viewer	9	9	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.setup_menu_bar	56	56	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.setup_status_bar	6	6	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.setup_connections	5	5	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.restore_window_state	9	9	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.save_window_state	1	1	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.new_pipeline	4	4	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.open_pipeline	5	5	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.save_pipeline	4	4	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_configuration	6	6	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_configuration.handle_config_save	6	6	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._connect_pipeline_to_plate_manager	17	17	0	12	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._connect_plate_to_pipeline_manager	17	17	0	12	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_synthetic_plate_generator	4	4	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._on_synthetic_plate_generated	10	10	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._load_pipeline_file	21	21	0	6	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.show_help	4	4	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.on_config_changed	7	7	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._save_config_to_cache	7	7	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.closeEvent	28	28	0	8	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.switch_to_dark_theme	2	2	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.switch_to_light_theme	2	2	0	0	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.load_theme_from_file	6	6	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow.save_theme_to_file	6	6	0	4	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._on_plate_progress_started	4	4	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._on_plate_progress_updated	2	2	0	2	0	0.0%
openhcs/pyqt_gui/main.py	OpenHCSMainWindow._on_plate_progress_finished	2	2	0	2	0	0.0%
openhcs/pyqt_gui/main.py	(no function)	55	55	0	0	0	0.0%
openhcs/pyqt_gui/services/__init__.py	(no function)	3	3	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncServiceBridge.__init__	3	3	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncServiceBridge.execute_async_operation	6	6	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncServiceBridge._cleanup_thread	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncServiceBridge.wait_for_all_operations	5	5	0	4	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncOperationThread.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	AsyncOperationThread.run	10	10	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	PatternFileServiceBridge.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	PatternFileServiceBridge.load_pattern_from_file	4	4	0	2	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	PatternFileServiceBridge.save_pattern_to_file	4	4	0	2	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	ExternalEditorServiceBridge.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	ExternalEditorServiceBridge.edit_pattern_in_external_editor	4	4	0	2	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	ExternalEditorServiceBridge._qt_external_editor_operation	28	28	0	8	0	0.0%
openhcs/pyqt_gui/services/async_service_bridge.py	(no function)	27	27	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	ConfigCacheWorker.__init__	5	5	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	ConfigCacheWorker.run	8	8	0	8	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	QtGlobalConfigCache.__init__	6	6	0	2	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	QtGlobalConfigCache.load_cached_config_async	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	QtGlobalConfigCache.save_config_to_cache_async	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	QtGlobalConfigCache._on_load_finished	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	QtGlobalConfigCache._on_save_finished	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	get_global_config_cache	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/config_cache_adapter.py	(no function)	19	19	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	is_wsl	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	get_cpu_freq_mhz	11	11	0	2	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.__init__	17	17	0	2	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.run	27	27	0	10	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread._collect_metrics	28	28	0	4	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.stop_monitoring	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.get_current_metrics	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.get_history_data	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitorThread.set_update_interval	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.__del__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.start_monitoring	4	4	0	2	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.stop_monitoring	9	9	0	4	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.get_current_metrics	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.get_history_data	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.connect_signals	4	4	0	4	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	PersistentSystemMonitor.set_update_interval	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/persistent_system_monitor.py	(no function)	35	35	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.__init__	5	5	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter._apply_dark_theme	6	6	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_theme_manager	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_current_color_scheme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.execute_async_operation	6	6	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.execute_async_operation.run_async_in_thread	9	9	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.show_dialog	7	7	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.show_error_dialog	6	6	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.show_info_dialog	6	6	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.show_cached_file_dialog	13	13	0	4	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.show_cached_directory_dialog	11	11	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.run_system_command	11	11	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.open_external_editor	7	7	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_global_config	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.set_global_config	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_theme_manager	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_current_color_scheme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_style_generator	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.apply_color_scheme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.switch_to_dark_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.switch_to_light_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.load_theme_from_config	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.save_current_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_current_style_sheet	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.register_theme_change_callback	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	PyQtServiceAdapter.get_file_manager	7	7	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	ExternalEditorProcess.__init__	3	3	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	ExternalEditorProcess.run	10	10	0	2	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	AsyncOperationThread.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	AsyncOperationThread.run	10	10	0	0	0	0.0%
openhcs/pyqt_gui/services/service_adapter.py	(no function)	46	46	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	SimpleCodeEditorService.__init__	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	SimpleCodeEditorService.edit_code	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	SimpleCodeEditorService._edit_with_qt_native	10	10	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	SimpleCodeEditorService._edit_with_external_program	22	22	0	6	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	SimpleCodeEditorService._show_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog.__init__	16	16	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._setup_ui	18	18	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._setup_menu_bar	68	68	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._configure_editor	19	19	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._configure_autocomplete	11	11	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog.eventFilter	8	8	0	4	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._setup_jedi_api	11	11	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._show_jedi_completions	58	58	0	18	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._apply_theme	3	3	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._apply_qscintilla_theme	28	28	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._new_file	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._open_file	12	12	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._save_as	15	15	0	4	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._toggle_line_numbers	5	5	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._toggle_code_folding	3	3	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._toggle_clean_mode	31	31	0	8	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog.get_content	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._handle_save	24	24	0	6	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._extract_error_line	10	10	0	8	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	QScintillaCodeEditorDialog._goto_line	7	7	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	CodeEditorDialog.__init__	22	22	0	2	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	CodeEditorDialog.get_content	1	1	0	0	0	0.0%
openhcs/pyqt_gui/services/simple_code_editor.py	(no function)	48	48	0	0	0	0.0%
openhcs/pyqt_gui/shared/__init__.py	(no function)	5	5	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.to_qcolor	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.to_qcolor_rgba	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.to_hex	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.create_dark_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.create_light_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.load_color_scheme_from_config	14	14	0	8	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.validate_wcag_contrast	7	7	0	2	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.validate_wcag_contrast.relative_luminance	4	4	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.validate_wcag_contrast.relative_luminance.gamma_correct	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.get_color_dict	6	6	0	4	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	PyQt6ColorScheme.save_to_json	11	11	0	0	0	0.0%
openhcs/pyqt_gui/shared/color_scheme.py	(no function)	88	88	0	0	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator.validate_config_file	24	24	0	10	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_structure	8	8	0	6	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_colors	7	7	0	6	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_colors.validate_color_section	5	5	0	6	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_color_value	15	15	0	10	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_wcag_compliance	14	14	0	4	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._validate_theme_variants	12	12	0	12	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._create_color_scheme_from_config	10	10	0	10	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._calculate_contrast_ratio	6	6	0	2	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._calculate_contrast_ratio.relative_luminance	4	4	0	0	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator._calculate_contrast_ratio.relative_luminance.gamma_correct	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator.get_validation_report	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	ColorSchemeValidator.print_validation_report	10	10	0	10	0	0.0%
openhcs/pyqt_gui/shared/config_validator.py	(no function)	19	19	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.update_color_scheme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.create_palette	21	21	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.apply_palette_to_application	10	10	0	6	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.restore_original_palette	7	7	0	4	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	PaletteManager.get_palette_info	3	3	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.__init__	5	5	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.switch_to_dark_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.switch_to_light_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.apply_color_scheme	10	10	0	2	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.register_theme_change_callback	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.unregister_theme_change_callback	2	2	0	2	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.get_current_style_sheet	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.load_theme_from_config	7	7	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	ThemeManager.save_current_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/palette_manager.py	(no function)	23	23	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.__init__	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.update_color_scheme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_dialog_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_tree_widget_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_table_widget_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_button_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_combobox_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_progress_bar_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_frame_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_tab_widget_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_system_monitor_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_complete_application_style	1	1	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_config_window_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_config_button_styles	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.generate_plate_manager_style	2	2	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	StyleSheetGenerator.get_status_color_hex	4	4	0	0	0	0.0%
openhcs/pyqt_gui/shared/style_generator.py	(no function)	20	20	0	0	0	0.0%
openhcs/pyqt_gui/utils/__init__.py	(no function)	2	2	0	0	0	0.0%
openhcs/pyqt_gui/utils/log_detection_utils.py	get_current_tui_log_path	2	2	0	0	0	0.0%
openhcs/pyqt_gui/utils/log_detection_utils.py	discover_all_logs	1	1	0	0	0	0.0%
openhcs/pyqt_gui/utils/log_detection_utils.py	(no function)	5	5	0	0	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.__init__	9	9	0	0	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.update	18	18	0	4	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.is_alive	3	3	0	2	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.get_process_info	1	1	0	0	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.get_status_icon	3	3	0	2	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	ProcessTracker.get_status_text	3	3	0	2	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	extract_pid_from_log_filename	12	12	0	8	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	get_log_display_name	3	3	0	0	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	get_log_tooltip	9	9	0	4	0	0.0%
openhcs/pyqt_gui/utils/process_tracker.py	(no function)	22	22	0	0	0	0.0%
openhcs/pyqt_gui/utils/window_utils.py	ensure_window_on_screen	21	21	0	12	0	0.0%
openhcs/pyqt_gui/utils/window_utils.py	_ClampWindowsFilter.eventFilter	14	14	0	8	0	0.0%
openhcs/pyqt_gui/utils/window_utils.py	_ClampWindowsFilter.eventFilter.clamp_once	5	5	0	2	0	0.0%
openhcs/pyqt_gui/utils/window_utils.py	install_global_window_bounds_filter	4	4	0	0	0	0.0%
openhcs/pyqt_gui/utils/window_utils.py	(no function)	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/__init__.py	(no function)	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	PathBehavior.title	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	PathBehavior.file_filter	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	PathBehaviorDetector.detect_behavior	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	PathBehaviorDetector._parse_docstring_hints	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	PathBehaviorDetector._detect_from_parameter_name	12	12	0	10	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget.__init__	15	15	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget._apply_styling	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget._setup_signals	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget._on_text_changed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget.set_path	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget.get_path	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	EnhancedPathWidget._open_dialog	14	14	0	4	0	0.0%
openhcs/pyqt_gui/widgets/enhanced_path_widget.py	(no function)	37	37	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.__init__	17	17	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._initialize_pattern_data	35	35	0	14	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._normalize_function_list	16	16	0	10	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.setup_ui	48	48	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._get_button_style	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._populate_function_list	35	35	0	16	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._apply_initial_enabled_styling_to_pane	9	9	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.setup_connections	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.add_function	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.edit_function_code	16	16	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._generate_complete_python_code	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._handle_edited_pattern	14	14	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._apply_edited_pattern	26	26	0	16	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._patch_lazy_constructors	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._patch_lazy_constructors.patch_context	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._patch_lazy_constructors.patch_context.create_patched_init	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._patch_lazy_constructors.patch_context.create_patched_init.patched_init	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._move_function	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._add_function_at_index	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._remove_function	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._on_parameter_changed	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.get_current_functions	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.current_pattern	8	8	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.set_functions	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._get_component_button_text	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._get_component_display_name	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._is_component_button_disabled	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget.show_component_selection_dialog	11	11	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._get_current_orchestrator	11	11	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._get_current_component_selection	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._handle_component_selection	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._update_components	37	37	0	24	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._refresh_component_button	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._update_navigation_buttons	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._navigate_channel	13	13	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._switch_to_channel	12	12	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	FunctionListEditorWidget._update_pattern_data	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/function_list_editor.py	(no function)	49	49	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.__init__	16	16	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.setup_ui	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.create_combined_header	36	36	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.create_parameter_form	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.create_parameter_widget	30	30	0	8	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.setup_connections	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.handle_button_action	10	10	0	10	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.handle_parameter_change	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.reset_all_parameters	8	8	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.update_widget_value	18	18	0	14	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.get_current_kwargs	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.sync_kwargs	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionPaneWidget.update_function	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.__init__	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.setup_ui	13	13	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.update_function_list	17	17	0	6	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.add_function_at_index	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.remove_function_at_index	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.move_function	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	FunctionListWidget.on_parameter_changed	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/function_pane.py	(no function)	37	37	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.__init__	26	26	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.init_ui	49	49	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_folder_tree	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_table_widget	18	18	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_right_panel	42	42	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_napari_config_panel	23	23	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_fiji_config_panel	24	24	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._update_tab_labels	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_napari_enable_toggled	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_fiji_enable_toggled	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._create_instance_manager_panel	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.set_orchestrator	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._restore_folder_selection	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.on_folder_selection_changed	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._apply_combined_filters	27	27	0	18	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._get_metadata_display_value	15	15	0	8	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._build_column_filters	20	20	0	14	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_column_filters_changed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_well_filter_changed	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.filter_images	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.filter_images.create_searchable_text	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.load_images	53	53	0	14	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.load_results	77	77	0	38	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_roi_file	19	19	0	8	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._populate_table	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._build_folder_tree	33	33	0	16	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.on_selection_changed	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.on_file_double_clicked	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._handle_image_double_click	10	10	0	6	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._handle_result_double_click	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.view_selected_in_napari	23	23	0	12	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.view_selected_in_fiji	27	27	0	14	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_napari	19	19	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_fiji	20	20	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_napari_async	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_napari_async.load_and_stream	34	34	0	10	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_batch_to_napari	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_batch_to_napari.stream_async	21	21	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._show_streaming_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_fiji_async	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._load_and_stream_batch_to_fiji_async.load_and_stream	35	35	0	10	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_batch_to_fiji	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_batch_to_fiji.stream_async	21	21	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._show_fiji_streaming_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_rois_to_napari	18	18	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._stream_rois_to_fiji	18	18	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._display_csv_file	14	14	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._display_json_file	12	12	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget.cleanup	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._toggle_plate_view	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._detach_plate_view	22	22	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._reattach_plate_view	10	10	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_detached_window_closed	8	8	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._on_wells_selected	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._update_plate_view	18	18	0	4	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._matches_wells	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._get_current_folder	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._detect_plate_subdirs	25	25	0	10	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._extract_well_id	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._detect_plate_dimensions	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._update_status_threadsafe	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	ImageBrowserWidget._update_status_label	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/image_browser.py	(no function)	75	75	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogColorScheme.create_dark_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogColorScheme.create_light_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogColorScheme.to_qcolor	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector.__init__	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector.start_watching	11	11	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector.stop_watching	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector.scan_directory	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector.detect_new_files	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileDetector._on_directory_changed	15	15	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.setup_pygments_styles	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter._create_format	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.setup_highlighting_rules	38	38	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.set_color_scheme	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.switch_to_dark_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.switch_to_light_theme	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.load_color_scheme_from_config	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogHighlighter.highlightBlock	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileLoader.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogFileLoader.run	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.__init__	27	27	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.setup_ui	51	51	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.setup_connections	13	13	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.showEvent	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.initialize_logs	20	20	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_subprocess_logs_async	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_subprocess_logs_async.scan_and_update	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_servers_async	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_servers_async.scan_and_update	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._on_subprocess_scan_complete	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._on_server_scan_complete	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_for_subprocess_logs	37	37	0	10	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_for_server_logs	19	19	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._scan_for_server_logs.ping_server	21	21	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.populate_log_dropdown	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._log_sort_key	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.clear_subprocess_logs	13	13	0	8	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.add_new_log	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.on_log_selection_changed	4	4	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.switch_to_log	19	19	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._on_file_loaded	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._on_file_load_failed	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.toggle_search_toolbar	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.perform_search	17	17	0	8	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.highlight_all_matches	17	17	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.clear_search_highlights	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.find_next	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.find_previous	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.toggle_auto_scroll	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.toggle_pause_tailing	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.clear_log_display	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.scroll_to_bottom	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.start_log_tailing	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.stop_log_tailing	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.read_log_incremental	34	34	0	12	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._attempt_reconnection	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.start_monitoring	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.stop_monitoring	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.start_process_tracking	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.update_process_status	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._get_process_start_time	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._is_log_from_current_session	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow._is_log_from_alive_process	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.on_filter_changed	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.cleanup	15	15	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	LogViewerWindow.closeEvent	8	8	0	6	0	0.0%
openhcs/pyqt_gui/widgets/log_viewer.py	(no function)	137	137	0	0	0	0.0%
openhcs/pyqt_gui/widgets/mixins/__init__.py	(no function)	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/mixins/selection_preservation_mixin.py	preserve_selection_during_update	12	12	0	8	0	0.0%
openhcs/pyqt_gui/widgets/mixins/selection_preservation_mixin.py	restore_selection_by_id	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/mixins/selection_preservation_mixin.py	handle_selection_change_with_prevention	9	9	0	6	0	0.0%
openhcs/pyqt_gui/widgets/mixins/selection_preservation_mixin.py	(no function)	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	StepListItemDelegate.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	StepListItemDelegate.paint	33	33	0	6	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	ReorderableListWidget.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	ReorderableListWidget.dropEvent	9	9	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.__init__	19	19	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.setup_ui	31	31	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.create_button_panel	20	20	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.setup_connections	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.handle_button_action	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.run_async_action	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.format_item_for_display	48	48	0	34	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._create_step_tooltip	50	50	0	28	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_add_step	14	14	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_add_step.handle_save	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_delete_step	11	11	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_edit_step	13	13	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_edit_step.handle_save	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_auto_load_pipeline	25	25	0	6	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.action_code_pipeline	15	15	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._handle_edited_pipeline_code	18	18	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._patch_lazy_constructors	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._patch_lazy_constructors.patch_context	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._patch_lazy_constructors.patch_context.create_patched_init	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._patch_lazy_constructors.patch_context.create_patched_init.patched_init	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.load_pipeline_from_file	12	12	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.save_pipeline_to_file	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.save_pipeline_for_plate	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.set_current_plate	8	8	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_orchestrator_config_changed	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.update_step_list	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.update_step_list.format_step_item	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.update_step_list.update_func	8	8	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.get_selected_steps	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.update_button_states	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.update_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_selection_changed	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_selection_changed.on_selected	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_selection_changed.on_cleared	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_item_double_clicked	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_steps_reordered	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_pipeline_changed	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._is_current_plate_initialized	19	19	0	12	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._get_current_orchestrator	15	15	0	10	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget._find_main_window	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	PipelineEditorWidget.on_config_changed	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/pipeline_editor.py	(no function)	59	59	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.__init__	27	27	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.cleanup	21	21	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.setup_ui	25	25	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.create_button_panel	24	24	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.setup_connections	10	10	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.handle_button_action	11	11	0	8	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.run_async_action	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._update_orchestrator_global_config	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_add_plate	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.add_plate_callback	16	16	0	8	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_delete_plate	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._validate_plates_for_operation	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_init_plate	14	14	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_init_plate.init_single_plate	18	18	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_init_plate.init_single_plate.initialize_with_context	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_edit_config	24	24	0	10	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_edit_config.handle_config_save	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._open_config_window	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_edit_global_config	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_edit_global_config.handle_global_config_save	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._save_global_config_to_cache	10	10	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_compile_plate	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._compile_plates_worker	62	62	0	18	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._compile_plates_worker.initialize_with_context	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._compile_plates_worker.compile_with_context	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_run_plate	9	9	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq	77	77	0	24	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._disconnect_old	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._connect	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._submit	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._start_completion_poller	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._start_completion_poller.poll_completion	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_execution_complete	28	28	0	12	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_execution_error	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_zmq_progress	10	10	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._emit_status_message	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution	52	52	0	10	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution.kill_server	13	13	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_code_plate	32	32	0	10	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._patch_lazy_constructors	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._patch_lazy_constructors.patch_context	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._patch_lazy_constructors.patch_context.create_patched_init	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._patch_lazy_constructors.patch_context.create_patched_init.patched_init	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._handle_edited_orchestrator_code	61	61	0	30	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._invalidate_orchestrator_compilation_state	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.action_view_metadata	17	17	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.update_plate_list	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.update_plate_list.format_plate_item	21	21	0	18	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.update_plate_list.update_func	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.get_selected_plates	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.get_selected_orchestrator	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.update_button_states	22	22	0	6	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.is_any_plate_running	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.update_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_selection_changed	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_selection_changed.on_selected	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_selection_changed.on_cleared	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_item_double_clicked	4	4	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_orchestrator_state_changed	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.on_config_changed	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._get_current_pipeline_definition	9	9	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget.set_pipeline_editor	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._find_main_window	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._start_monitoring	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._start_monitoring.check_process	17	17	0	10	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_progress_started	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_progress_updated	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._on_progress_finished	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._handle_compilation_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._handle_initialization_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	PlateManagerWidget._handle_execution_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/plate_manager.py	(no function)	93	93	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/__init__.py	(no function)	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	ClickableHelpLabel.__init__	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	ClickableHelpLabel.mousePressEvent	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	ClickableFunctionTitle.__init__	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	ClickableParameterLabel.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	HelpIndicator.__init__	10	10	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	HelpIndicator.mousePressEvent	12	12	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	HelpButton.__init__	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	HelpButton.show_help	9	9	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	LabelWithHelp.__init__	10	10	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	FunctionTitleWithHelp.__init__	20	20	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	GroupBoxWithHelp.__init__	24	24	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	GroupBoxWithHelp.addWidget	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	GroupBoxWithHelp.addLayout	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	GroupBoxWithHelp.addTitleWidget	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/clickable_help_components.py	(no function)	31	31	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	NonCompressingSplitter.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	NonCompressingSplitter.moveSplitter	16	16	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	NonCompressingSplitter.resizeEvent	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget.__init__	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget._init_ui	48	48	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget._on_checkbox_changed	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget._update_count_label	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget.select_all	8	8	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget.select_none	8	8	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget.get_selected_values	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	ColumnFilterWidget.set_selected_values	8	8	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.__init__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel._init_ui	14	14	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.resizeEvent	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.showEvent	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.add_column_filter	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel._update_splitter_sizes	16	16	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel._deferred_size_update	20	20	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.remove_column_filter	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.clear_all_filters	2	2	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel._on_filter_changed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.get_active_filters	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.apply_filters	17	17	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	MultiColumnFilterPanel.reset_all_filters	2	2	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/column_filter_widget.py	(no function)	37	37	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/layout_constants.py	(no function)	16	16	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollSpinBox.wheelEvent	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollDoubleSpinBox.wheelEvent	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollComboBox.__init__	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollComboBox.wheelEvent	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollComboBox.setPlaceholder	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollComboBox.setCurrentIndex	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoScrollComboBox.paintEvent	16	16	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoneAwareCheckBox.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoneAwareCheckBox.get_value	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoneAwareCheckBox.set_value	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoneAwareCheckBox.mousePressEvent	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	NoneAwareCheckBox.paintEvent	16	16	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/no_scroll_spinbox.py	(no function)	19	19	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	NoneAwareLineEdit.get_value	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	NoneAwareLineEdit.set_value	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	_create_optimized_reset_button	6	6	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	NoneAwareIntEdit.__init__	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	NoneAwareIntEdit.get_value	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	NoneAwareIntEdit.set_value	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.should_use_async	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.__init__	87	87	0	24	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._extract_parameters_from_object	11	11	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._auto_detect_global_config_type	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._extract_parameter_defaults	10	10	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._is_lazy_dataclass	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.create_widget	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.from_dataclass_instance	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.from_object	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.setup_ui	25	25	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.build_form	51	51	0	20	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.build_form.on_async_complete	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_widget_for_param	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_widgets_async	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_widgets_async.create_next_batch	10	10	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_regular_parameter_widget	32	32	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_regular_widget	18	18	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_regular_widget.on_checkbox_changed	13	13	0	10	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_regular_parameter_widget_for_type	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_nested_dataclass_widget	20	20	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_dataclass_widget	53	53	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_dataclass_widget.on_checkbox_changed	20	20	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_dataclass_widget.apply_initial_styling	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_nested_form_inline	36	36	0	14	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._convert_widget_value	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._emit_parameter_change	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.update_widget_value	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._dispatch_widget_update	6	6	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._clear_widget_to_default_state	13	13	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._update_combo_box	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._update_checkbox_group	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._execute_with_signal_blocking	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._apply_context_behavior	10	10	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.get_widget_value	6	6	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.reset_all_parameters	12	12	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.update_parameter	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._is_function_parameter	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.reset_parameter	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._reset_parameter_impl	67	67	0	28	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._get_reset_value	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.get_current_values	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.get_user_modified_values	17	17	0	14	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._reconstruct_nested_dataclasses	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._build_context_stack	91	91	0	48	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._apply_initial_enabled_styling	27	27	0	18	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._is_any_ancestor_disabled	9	9	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._refresh_enabled_styling	25	25	0	20	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_enabled_field_changed_universal	75	75	0	42	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_enabled_field_changed_universal.get_direct_widgets	18	18	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_nested_parameter_changed	16	16	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._refresh_with_live_context	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._refresh_all_placeholders	15	15	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._apply_to_nested_managers	2	2	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._apply_all_styling_callbacks	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._apply_all_post_placeholder_callbacks	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_nested_manager_complete	19	19	0	10	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._process_nested_values_if_checkbox_enabled	25	25	0	18	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._make_widget_readonly	14	14	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._emit_cross_window_change	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager.unregister_from_cross_window_updates	21	21	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_destroyed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_cross_window_context_changed	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._on_cross_window_context_refreshed	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._is_affected_by_context_change	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._schedule_cross_window_refresh	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._find_live_values_for_type	13	13	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._collect_live_context_from_other_windows	24	24	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	ParameterFormManager._do_cross_window_refresh	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/parameter_form_manager.py	(no function)	106	106	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.__init__	23	23	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._setup_ui	52	52	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.set_subdirectories	24	24	0	10	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._on_subdir_selected	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.set_available_wells	12	12	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._detect_dimensions	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._clear_grid	7	7	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._build_grid	31	31	0	10	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._index_to_row_letter	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._get_well_button_style	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._on_well_clicked	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.clear_selection	11	11	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.select_wells	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._update_status	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.eventFilter	37	37	0	24	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._toggle_well_selection	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget._update_drag_selection	26	26	0	14	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.set_well_filter_widget	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.sync_to_well_filter	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	PlateViewWidget.sync_from_well_filter	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/plate_view_widget.py	(no function)	30	30	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_get_enum_display_text	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	create_enhanced_path_widget	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_create_none_aware_int_widget	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_create_none_aware_checkbox	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_create_direct_int_widget	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_create_direct_float_widget	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_create_direct_bool_widget	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	convert_widget_value_to_type	30	30	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	register_openhcs_widgets	3	3	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	create_string_fallback_widget	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	create_enum_widget_unified	11	11	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	MagicGuiWidgetFactory.create_widget	68	68	0	38	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	MagicGuiWidgetFactory._create_checkbox_group_widget	18	18	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	MagicGuiWidgetFactory._create_checkbox_group_widget.get_selected_values	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_extract_default_value	11	11	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_extract_numeric_value_from_placeholder	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_placeholder_styling	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_lineedit_placeholder	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_spinbox_placeholder	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_checkbox_placeholder	13	13	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_path_widget_placeholder	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_apply_combobox_placeholder	16	16	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_item_matches_value	12	12	0	10	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_register_path_widget_strategy	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_register_none_aware_lineedit_strategy	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	_register_none_aware_checkbox_strategy	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.apply_placeholder_text	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.apply_global_config_placeholder	15	15	0	8	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.connect_change_signal	10	10	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.connect_change_signal.create_wrapped_callback	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.connect_change_signal.create_wrapped_callback.wrapped	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer._connect_checkbox_group_signals	3	3	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer._clear_placeholder_state	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer._get_magicgui_wrapper	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	PyQt6WidgetEnhancer.set_widget_value	18	18	0	16	0	0.0%
openhcs/pyqt_gui/widgets/shared/widget_strategies.py	(no function)	73	73	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	register_launching_viewer	8	8	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	update_launching_viewer_queue	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	unregister_launching_viewer	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	_trigger_manager_refresh_fast	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	_trigger_manager_refresh_full	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	get_launching_viewers	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.__init__	12	12	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.cleanup	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.__del__	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.showEvent	5	5	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.hideEvent	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.setup_ui	33	33	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.refresh_servers	6	6	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.refresh_servers.scan_and_update	13	13	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget._ping_server	34	34	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget._refresh_launching_viewers_only	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget._update_server_list	105	105	0	48	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget._on_kill_complete	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.quit_selected_servers	22	22	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.quit_selected_servers.kill_servers	20	20	0	6	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.force_kill_selected_servers	22	22	0	12	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget.force_kill_selected_servers.kill_servers	17	17	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	ZMQServerManagerWidget._on_item_double_clicked	8	8	0	4	0	0.0%
openhcs/pyqt_gui/widgets/shared/zmq_server_manager.py	(no function)	40	40	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.__init__	16	16	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.setup_ui	12	12	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.create_status_section	11	11	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.create_progress_section	14	14	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.create_time_section	10	10	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.setup_connections	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.start_time_updates	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.stop_time_updates	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.update_time_display	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_status	11	11	0	6	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_operation	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.show_progress	7	7	0	2	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.update_progress	3	3	0	2	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.hide_progress	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.update_status_display	2	2	0	2	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_info_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_warning_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_error_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.set_success_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.clear_status	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	StatusBarWidget.closeEvent	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/status_bar.py	(no function)	32	32	0	0	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.__init__	27	27	0	6	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._is_optional_lazy_dataclass_in_pipeline	11	11	0	4	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._find_pipeline_field_by_type	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.setup_ui	25	25	0	0	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._get_button_style	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.setup_connections	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._handle_parameter_change	23	23	0	8	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.load_step_settings	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.save_step_settings	7	7	0	4	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._load_step_settings_from_file	15	15	0	8	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget._save_step_settings_to_file	10	10	0	2	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.get_current_step	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	StepParameterEditorWidget.update_step	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/step_parameter_editor.py	(no function)	27	27	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.__init__	14	14	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_loading_placeholder	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._load_pyqtgraph_async	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._import_pyqtgraph_main_thread	22	22	0	2	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._switch_to_pyqtgraph_ui	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._switch_to_fallback_ui	7	7	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.showEvent	5	5	0	2	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.resizeEvent	4	4	0	2	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.closeEvent	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.__del__	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._update_font_sizes_from_panel	16	16	0	8	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.setup_ui	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_header_section	11	11	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_info_panel	44	44	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_info_row	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_pyqtgraph_section	43	43	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_layout_toggle_button	8	8	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.toggle_graph_layout	6	6	0	4	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._update_graph_layout	9	9	0	6	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_fallback_section	9	9	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.setup_connections	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.start_monitoring	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.stop_monitoring	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.cleanup	28	28	0	12	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.on_metrics_updated	12	12	0	2	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.on_metrics_error	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.update_display	8	8	0	4	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.update_pyqtgraph_plots	28	28	0	6	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.update_fallback_display	5	5	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.update_system_info	27	27	0	4	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.create_text_bar	4	4	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.get_ascii_header	1	1	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.set_update_interval	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.update_config	15	15	0	4	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget._update_plot_appearance	9	9	0	2	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	SystemMonitorWidget.closeEvent	2	2	0	0	0	0.0%
openhcs/pyqt_gui/widgets/system_monitor.py	(no function)	55	55	0	0	0	0.0%
openhcs/pyqt_gui/windows/__init__.py	(no function)	7	7	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	HasUnregisterMethod.unregister_from_cross_window_updates	0	0	1	0	0	100.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog.__init__	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog._get_form_managers	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog._collect_form_managers_recursive	22	22	0	16	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog._unregister_all_form_managers	16	16	0	6	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog.accept	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog.reject	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	BaseFormDialog.closeEvent	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/base_form_dialog.py	(no function)	13	13	2	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.__init__	17	17	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.setup_ui	57	57	0	2	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._create_inheritance_tree	7	7	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._populate_inheritance_tree	3	3	0	2	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._get_base_type	6	6	0	6	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._add_ui_visible_dataclasses_to_tree	27	27	0	12	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._is_field_ui_hidden	11	11	0	4	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._add_inheritance_info	20	20	0	10	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._on_tree_item_double_clicked	23	23	0	14	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._find_field_for_class	15	15	0	12	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._scroll_to_section	22	22	0	10	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.update_widget_value	16	16	0	14	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.reset_to_defaults	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.save_config	21	21	0	4	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._patch_lazy_constructors	7	7	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._patch_lazy_constructors.patch_context	10	10	0	6	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._patch_lazy_constructors.patch_context.create_patched_init	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._patch_lazy_constructors.patch_context.create_patched_init.patched_init	5	5	0	4	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._view_code	14	14	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._handle_edited_config_code	22	22	0	6	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._extract_explicitly_set_fields	10	10	0	2	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._update_form_from_config	10	10	0	8	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._update_nested_dataclass	10	10	0	8	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._update_nested_dataclass_in_manager	10	10	0	8	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow.reject	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	ConfigWindow._get_form_managers	3	3	0	2	0	0.0%
openhcs/pyqt_gui/windows/config_window.py	(no function)	39	39	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.__init__	23	23	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.set_original_step_for_change_detection	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.setup_ui	51	51	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.create_step_tab	8	8	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.create_function_tab	12	12	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._on_function_pattern_changed	11	11	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.setup_connections	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._convert_step_func_to_list	5	5	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._find_main_window	12	12	0	4	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._get_current_plate_from_pipeline_editor	20	20	0	12	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.get_function_info	14	14	0	8	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.on_form_parameter_changed	13	13	0	4	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.on_tab_changed	4	4	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.detect_changes	8	8	0	4	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.on_changes_detected	5	5	0	2	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.save_edit	38	38	0	18	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._apply_changes_to_original	14	14	0	12	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._clone_step	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow._create_new_step	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.cancel_edit	8	8	0	4	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	DualEditorWindow.closeEvent	7	7	0	4	0	0.0%
openhcs/pyqt_gui/windows/dual_editor_window.py	(no function)	36	36	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.__init__	18	18	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.setup_ui	16	16	0	2	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.create_header	27	27	0	4	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.create_content_area	18	18	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.create_selection_info_panel	12	12	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.create_footer	11	11	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.create_button_panel	17	17	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.setup_connections	3	3	0	2	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.update_name_filters	12	12	0	10	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.navigate_to_path	8	8	0	6	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.navigate_up	3	3	0	2	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.on_path_entered	10	10	0	4	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.on_filter_changed	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.on_selection_changed	10	10	0	6	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.on_item_double_clicked	5	5	0	2	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.update_selection_list	5	5	0	2	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.confirm_selection	18	18	0	10	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	FileBrowserWindow.cancel_selection	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	open_file_browser_window	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/file_browser_window.py	(no function)	39	39	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.__init__	7	7	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.setup_ui	13	13	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.create_header	15	15	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.create_content_area	5	5	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.create_button_panel	12	12	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.setup_connections	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.get_ascii_title	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.format_help_content	13	13	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.set_content	3	3	0	2	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.show_section	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	HelpWindow.show_help	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	show_help_dialog	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_window.py	(no function)	23	23	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	BaseHelpWindow.__init__	7	7	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	BaseHelpWindow.setup_ui	12	12	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	DocstringHelpWindow.__init__	8	8	0	4	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	DocstringHelpWindow.populate_content	59	59	0	14	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	HelpWindowManager.show_docstring_help	18	18	0	4	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	HelpWindowManager.show_parameter_help	31	31	0	4	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	HelpableWidget.show_function_help	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	HelpableWidget.show_parameter_help	1	1	0	0	0	0.0%
openhcs/pyqt_gui/windows/help_windows.py	(no function)	23	23	0	0	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow.__init__	10	10	0	0	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow._setup_ui	45	45	0	4	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow._create_image_browser_tab	4	4	0	0	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow._create_metadata_viewer_tab	41	41	0	6	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow._create_single_metadata_form	3	3	0	0	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow._create_multi_subdirectory_forms	8	8	0	2	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	PlateViewerWindow.cleanup	2	2	0	2	0	0.0%
openhcs/pyqt_gui/windows/plate_viewer_window.py	(no function)	16	16	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.__init__	6	6	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.setup_ui	46	46	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow._create_output_dir_selector	17	17	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.browse_output_dir	5	5	0	2	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.generate_plate	21	21	0	2	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.reject	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow.accept	2	2	0	0	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	SyntheticPlateGeneratorWindow._cleanup	9	9	0	2	0	0.0%
openhcs/pyqt_gui/windows/synthetic_plate_generator_window.py	(no function)	22	22	0	0	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	_cleanup_global_fiji_viewer	10	8	0	4	1	21.4%
openhcs/runtime/fiji_stream_visualizer.py	_spawn_detached_fiji_process	24	6	0	4	2	71.4%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.__init__	11	0	0	0	0	100.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.is_running	24	22	0	12	1	8.3%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer._quick_ping_check	18	18	0	0	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.wait_for_ready	1	1	0	0	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.start_viewer	30	12	0	12	4	57.1%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.start_viewer.wait_and_set_ready	4	4	0	2	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer._is_port_in_use	14	10	0	2	1	31.2%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer._try_connect_to_existing_viewer	18	3	0	0	0	83.3%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer._wait_for_server_ready	26	26	0	4	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.send_control_message	42	39	0	6	1	8.3%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.clear_viewer_state	1	0	0	0	0	100.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.stop_viewer	24	24	0	14	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer._cleanup_zmq	6	6	0	2	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	FijiStreamVisualizer.is_viewer_running	1	1	0	0	0	0.0%
openhcs/runtime/fiji_stream_visualizer.py	(no function)	29	0	0	0	0	100.0%
openhcs/runtime/napari_stream_visualizer.py	_cleanup_global_viewer	10	10	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_parse_component_info_from_path	18	18	0	8	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_build_nd_shapes	23	23	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_build_nd_image_array	18	18	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_create_or_update_shapes_layer	13	13	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_create_or_update_image_layer	23	23	0	12	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_handle_component_aware_display	67	67	0	32	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_old_immediate_update_logic_removed	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer.__init__	13	13	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._setup_ack_socket	10	10	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._schedule_layer_update	9	9	0	2	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._execute_layer_update	17	17	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._update_image_layer	35	35	0	20	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._update_shapes_layer	11	11	0	2	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._shapes_to_labels	36	36	0	18	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._send_ack	8	8	0	2	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._create_pong_response	13	13	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer.handle_control_message	13	13	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer.handle_data_message	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer.process_image_message	9	9	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariViewerServer._process_single_image	54	54	0	18	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_napari_viewer_process	39	39	0	14	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_napari_viewer_process.cleanup_and_exit	6	6	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_napari_viewer_process.process_messages	8	8	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	_spawn_detached_napari_process	28	28	0	10	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.__init__	14	14	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.is_running	24	24	0	12	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._quick_ping_check	18	18	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.wait_for_ready	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._find_free_port	4	4	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.start_viewer	5	5	0	2	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._start_viewer_sync	36	36	0	12	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._try_connect_to_existing_viewer	36	36	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._is_port_in_use	22	22	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._wait_for_viewer_ready	37	37	0	8	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._setup_zmq_client	8	8	0	2	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.send_control_message	41	41	0	6	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.clear_viewer_state	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.send_image_data	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.stop_viewer	22	22	0	12	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._cleanup_zmq	6	6	0	4	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer.visualize_path	1	1	0	0	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	NapariStreamVisualizer._prepare_data_for_display	62	62	0	32	0	0.0%
openhcs/runtime/napari_stream_visualizer.py	(no function)	72	61	0	2	0	14.9%
openhcs/runtime/queue_tracker.py	QueueTracker.__init__	8	0	0	0	0	100.0%
openhcs/runtime/queue_tracker.py	QueueTracker.register_sent	4	4	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.mark_processed	14	14	0	6	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.get_progress	2	2	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.get_pending_count	2	2	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.has_stuck_images	6	6	0	4	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.get_stuck_images	8	8	0	4	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.clear	6	6	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.reset_for_new_batch	6	6	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	QueueTracker.__repr__	0	0	2	0	0	100.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.__new__	6	4	0	4	1	30.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.__init__	6	4	0	2	1	37.5%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.get_or_create_tracker	5	0	0	2	0	100.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.get_tracker	2	2	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.remove_tracker	4	4	0	2	0	0.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.get_all_trackers	2	2	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	GlobalQueueTrackerRegistry.clear_all	3	3	0	0	0	0.0%
openhcs/runtime/queue_tracker.py	(no function)	25	25	1	0	0	0.0%
openhcs/runtime/zmq_base.py	get_default_transport_mode	1	0	0	0	0	100.0%
openhcs/runtime/zmq_base.py	_get_ipc_socket_path	5	1	0	2	1	71.4%
openhcs/runtime/zmq_base.py	_remove_ipc_socket	10	4	0	2	1	58.3%
openhcs/runtime/zmq_base.py	get_zmq_transport_url	9	4	0	6	2	46.7%
openhcs/runtime/zmq_base.py	start_global_ack_listener	9	0	0	2	0	100.0%
openhcs/runtime/zmq_base.py	_ack_listener_loop	43	43	0	10	0	0.0%
openhcs/runtime/zmq_base.py	stop_global_ack_listener	5	5	0	2	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.__init__	13	13	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.start	21	21	0	6	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.stop	14	14	0	8	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.is_running	1	1	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.process_messages	14	14	0	6	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer._create_pong_response	1	1	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.get_status_info	1	1	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.request_shutdown	1	1	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.kill_processes_on_port	24	17	0	12	2	25.0%
openhcs/runtime/zmq_base.py	ZMQServer.load_images_from_shared_memory	21	21	0	4	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.collect_dimension_values	8	8	0	4	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.organize_components_by_mode	10	10	0	6	0	0.0%
openhcs/runtime/zmq_base.py	ZMQServer.handle_control_message	0	0	1	0	0	100.0%
openhcs/runtime/zmq_base.py	ZMQServer.handle_data_message	0	0	1	0	0	100.0%
openhcs/runtime/zmq_base.py	ZMQClient.__init__	12	0	0	0	0	100.0%
openhcs/runtime/zmq_base.py	ZMQClient.connect	16	4	0	8	3	70.8%
openhcs/runtime/zmq_base.py	ZMQClient.disconnect	18	8	0	12	4	46.7%
openhcs/runtime/zmq_base.py	ZMQClient.is_connected	1	1	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQClient._setup_client_sockets	8	0	0	0	0	100.0%
openhcs/runtime/zmq_base.py	ZMQClient._cleanup_sockets	9	2	0	6	3	66.7%
openhcs/runtime/zmq_base.py	ZMQClient._try_connect_to_existing	18	3	0	0	0	83.3%
openhcs/runtime/zmq_base.py	ZMQClient._wait_for_server_ready	31	7	0	8	3	74.4%
openhcs/runtime/zmq_base.py	ZMQClient._is_port_in_use	14	11	0	2	1	25.0%
openhcs/runtime/zmq_base.py	ZMQClient._find_free_port	3	3	0	0	0	0.0%
openhcs/runtime/zmq_base.py	ZMQClient._kill_processes_on_port	23	19	0	14	1	13.5%
openhcs/runtime/zmq_base.py	ZMQClient.scan_servers	26	26	0	4	0	0.0%
openhcs/runtime/zmq_base.py	ZMQClient.kill_server_on_port	55	55	0	10	0	0.0%
openhcs/runtime/zmq_base.py	ZMQClient.kill_server_on_port.is_port_free	15	15	0	2	0	0.0%
openhcs/runtime/zmq_base.py	ZMQClient._spawn_server_process	0	0	1	0	0	100.0%
openhcs/runtime/zmq_base.py	ZMQClient.send_data	0	0	1	0	0	100.0%
openhcs/runtime/zmq_base.py	(no function)	64	0	8	0	0	100.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.__init__	4	0	0	0	0	100.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient._start_progress_listener	7	7	0	4	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient._stop_progress_listener	6	4	0	4	1	30.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient._progress_listener_loop	22	22	0	6	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.submit_pipeline	18	3	0	8	4	73.1%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.wait_for_completion	35	13	0	12	2	59.6%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.execute_pipeline	5	1	0	2	1	71.4%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.get_status	4	0	0	2	1	83.3%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.cancel_execution	1	1	0	0	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.ping	5	5	0	0	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.get_server_info	15	15	0	2	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient._send_control_request	15	2	0	0	0	86.7%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient._spawn_server_process	11	1	0	2	1	84.6%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.disconnect	2	0	0	0	0	100.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.send_data	1	1	0	0	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.__enter__	2	2	0	0	0	0.0%
openhcs/runtime/zmq_execution_client.py	ZMQExecutionClient.__exit__	1	1	0	0	0	0.0%
openhcs/runtime/zmq_execution_client.py	(no function)	31	0	0	0	0	100.0%
openhcs/runtime/zmq_messages.py	ControlMessageType.get_handler_method	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ControlMessageType.dispatch	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	SocketType.from_zmq_constant	2	2	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	SocketType.get_display_name	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ExecuteRequest.validate	7	7	0	6	0	0.0%
openhcs/runtime/zmq_messages.py	ExecuteRequest.to_dict	10	10	0	8	0	0.0%
openhcs/runtime/zmq_messages.py	ExecuteRequest.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ExecuteResponse.to_dict	8	8	0	6	0	0.0%
openhcs/runtime/zmq_messages.py	StatusRequest.to_dict	4	4	0	2	0	0.0%
openhcs/runtime/zmq_messages.py	StatusRequest.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	CancelRequest.validate	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	CancelRequest.to_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	CancelRequest.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	PongResponse.to_dict	12	12	0	10	0	0.0%
openhcs/runtime/zmq_messages.py	ProgressUpdate.to_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ImageAck.to_dict	6	6	0	4	0	0.0%
openhcs/runtime/zmq_messages.py	ImageAck.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ROIMessage.to_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ROIMessage.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ShapesMessage.to_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	ShapesMessage.from_dict	1	1	0	0	0	0.0%
openhcs/runtime/zmq_messages.py	(no function)	151	0	0	0	0	100.0%
openhcs/textual_tui/__init__.py	(no function)	1	1	0	0	0	0.0%
openhcs/textual_tui/__main__.py	_parse_command_line_arguments	5	5	0	0	0	0.0%
openhcs/textual_tui/__main__.py	_serve_web	21	21	0	0	0	0.0%
openhcs/textual_tui/__main__.py	_setup_logging	17	17	0	0	0	0.0%
openhcs/textual_tui/__main__.py	main	5	5	0	2	0	0.0%
openhcs/textual_tui/__main__.py	_setup_signal_handlers	6	6	0	0	0	0.0%
openhcs/textual_tui/__main__.py	_setup_signal_handlers.force_cleanup	8	8	0	2	0	0.0%
openhcs/textual_tui/__main__.py	main_async	41	41	0	4	0	0.0%
openhcs/textual_tui/__main__.py	(no function)	14	14	2	0	0	0.0%
openhcs/textual_tui/adapters/__init__.py	(no function)	0	0	0	0	0	100.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.__init__	14	14	0	2	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.filter_paths	14	14	0	10	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.on_click	31	31	0	12	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._handle_left_click	6	6	0	0	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._handle_right_click	13	13	0	4	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._handle_double_click	10	10	0	2	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._force_ui_update	32	32	0	16	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._refresh_specific_path	14	14	0	12	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree._refresh_specific_path.find_node_for_path	11	11	0	10	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.render_label	13	13	0	6	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.AddToSelectionList.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.NavigateToFolder.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	OpenHCSDirectoryTree.SelectFile.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/adapters/universal_directorytree.py	(no function)	25	25	0	0	0	0.0%
openhcs/textual_tui/app.py	ErrorDialog.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/app.py	ErrorDialog.compose	5	5	0	2	0	0.0%
openhcs/textual_tui/app.py	ErrorDialog.on_button_pressed	2	2	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._generate_bindings	7	7	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.__init__	9	9	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.configure_toolong	4	4	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.compose	3	3	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.on_mount	24	24	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.watch_current_status	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_quit	11	11	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_quit.force_cleanup	6	6	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_toggle_window_switcher	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_focus_next_window	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_focus_previous_window	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_set_horizontal_split	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_set_vertical_split	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_set_grid_layout	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_set_master_detail	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_toggle_floating	4	4	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_move_focused_window_prev	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_move_focused_window_next	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_rotate_window_order_left	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_rotate_window_order_right	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_gap_increase	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_gap_decrease	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_minimize_all_windows	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.action_open_all_windows	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._add_start_menu_button	20	20	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.open_blocking_window	7	7	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._disable_main_interactions	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._enable_main_interactions	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.on_window_closed	3	3	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.show_error	16	16	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._mount_error_dialog	2	2	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._handle_exception	6	6	0	2	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._on_exception	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp._on_unhandled_exception	1	1	0	0	0	0.0%
openhcs/textual_tui/app.py	OpenHCSTUIApp.on_unmount	26	26	0	8	0	0.0%
openhcs/textual_tui/app.py	main	12	12	0	0	0	0.0%
openhcs/textual_tui/app.py	(no function)	62	62	2	0	0	0.0%
openhcs/textual_tui/config.py	(no function)	34	34	0	0	0	0.0%
openhcs/textual_tui/services/__init__.py	(no function)	5	5	0	0	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	load_cached_global_config_tui	1	1	0	0	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	get_tui_config_cache	1	1	0	0	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	save_global_config_to_cache	2	2	0	0	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	clear_global_config_cache	2	2	0	0	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	get_global_config_cache_info	10	10	0	2	0	0.0%
openhcs/textual_tui/services/config_cache_adapter.py	(no function)	7	7	0	0	0	0.0%
openhcs/textual_tui/services/config_reflection_service.py	FieldIntrospector.analyze_dataclass	9	9	0	6	0	0.0%
openhcs/textual_tui/services/config_reflection_service.py	FieldIntrospector._analyze_field	17	17	0	8	0	0.0%
openhcs/textual_tui/services/config_reflection_service.py	(no function)	19	19	0	0	0	0.0%
openhcs/textual_tui/services/external_editor_service.py	ExternalEditorService.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/external_editor_service.py	ExternalEditorService.edit_pattern_in_external_editor	21	21	0	2	0	0.0%
openhcs/textual_tui/services/external_editor_service.py	ExternalEditorService._validate_pattern_file	23	23	0	6	0	0.0%
openhcs/textual_tui/services/external_editor_service.py	ExternalEditorService._show_error_dialog	2	2	0	0	0	0.0%
openhcs/textual_tui/services/external_editor_service.py	(no function)	13	13	0	0	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileItem.display_size	10	10	0	8	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileItem.display_mtime	6	6	0	2	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileBrowserService.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileBrowserService.load_directory	17	17	0	2	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileBrowserService.can_select_item	5	5	0	4	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	FileBrowserService.filter_items	9	9	0	8	0	0.0%
openhcs/textual_tui/services/file_browser_service.py	(no function)	27	27	0	0	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.clone_pattern	3	3	0	2	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.convert_list_to_dict	3	3	0	2	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.convert_dict_to_list	5	5	0	4	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.extract_func_and_kwargs	10	10	0	4	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.validate_pattern_structure	18	18	0	18	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.get_current_functions	5	5	0	4	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.update_pattern_functions	7	7	0	4	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.add_new_key	4	4	0	2	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	PatternDataManager.remove_key	4	4	0	2	0	0.0%
openhcs/textual_tui/services/pattern_data_manager.py	(no function)	21	21	0	0	0	0.0%
openhcs/textual_tui/services/pattern_file_service.py	PatternFileService.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/services/pattern_file_service.py	PatternFileService.edit_pattern_externally	7	7	0	0	0	0.0%
openhcs/textual_tui/services/pattern_file_service.py	(no function)	8	8	0	0	0	0.0%
openhcs/textual_tui/services/system_monitor.py	SystemMonitor.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/system_monitor.py	SystemMonitor.get_ascii_title	1	1	0	0	0	0.0%
openhcs/textual_tui/services/system_monitor.py	SystemMonitor.create_monitor_view	72	72	0	8	0	0.0%
openhcs/textual_tui/services/system_monitor.py	SystemMonitor.get_metrics_dict	3	3	0	2	0	0.0%
openhcs/textual_tui/services/system_monitor.py	main	11	11	0	0	0	0.0%
openhcs/textual_tui/services/system_monitor.py	(no function)	14	14	2	0	0	0.0%
openhcs/textual_tui/services/terminal.py	next_compat	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	handle_special	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	_reduce_renditions	25	25	0	22	0	0.0%
openhcs/textual_tui/services/terminal.py	unicode_counter	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	pua_counter	13	13	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	convert_to_timedelta	18	18	0	12	0	0.0%
openhcs/textual_tui/services/terminal.py	total_seconds	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	spanify_screen	87	87	0	54	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.__init__	11	11	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.timeout	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.timeout	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.interval	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.interval	8	8	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.renew	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.__setitem__	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.__delitem__	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.__del__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.update	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict.clear	3	3	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	AutoExpireDict._timeout_checker	5	5	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.__init__	9	9	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.__repr__	0	0	1	0	0	100.0%
openhcs/textual_tui/services/terminal.py	FileType.__str__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.__del__	9	9	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.raw	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.html	0	0	1	0	0	100.0%
openhcs/textual_tui/services/terminal.py	FileType.capture	6	6	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	FileType.close	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	ImageFile.capture	81	81	0	30	0	0.0%
openhcs/textual_tui/services/terminal.py	ImageFile.html	20	20	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	PNGFile.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	JPEGFile.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	SoundFile.capture	16	16	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	SoundFile.html	11	11	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	WAVFile.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	WAVFile.helper	15	15	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	OGGFile.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	OGGFile.helper	20	20	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	OGGFile.display_metadata	13	13	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	PDFFile.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	PDFFile.generate_thumbnail	13	13	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	PDFFile.capture	30	30	0	18	0	0.0%
openhcs/textual_tui/services/terminal.py	PDFFile.html	4	4	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.__init__	38	38	0	26	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.initialize	47	47	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.add_magic	7	7	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.remove_magic	18	18	0	14	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.update_magic	8	8	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.init_screen	6	6	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.init_renditions	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.init_scrollback	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.add_callback	4	4	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.remove_callback	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.remove_all_callbacks	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.send_message	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.send_update	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.send_cursor_update	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.reset	29	29	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.__ignore	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.resize	31	31	0	22	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._set_top_bottom	8	8	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.get_cursor_position	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.set_title	8	8	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.get_title	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.save_cursor_position	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.restore_cursor_position	4	4	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._dsr_get_cursor_position	7	7	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._dcs_handler	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._set_line_params	7	7	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.set_G0_charset	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.set_G1_charset	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.use_g0_charset	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.use_g1_charset	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.abort_capture	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.write	160	160	0	64	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.flush	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.scroll_up	21	21	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.scroll_down	17	17	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.insert_line	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.delete_line	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.backspace	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.horizontal_tab	5	5	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._set_tabstop	5	5	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.linefeed	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.next_line	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.reverse_linefeed	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.newline	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.carriage_return	8	8	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._xon	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._xoff	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._cancel_esc_sequence	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._sub_esc_sequence	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._escape	4	4	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._csi	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._filetype_instance	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._capture_file	10	10	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._captured_fd_watcher	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.close_captured_fds	18	18	0	16	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._string_terminator	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._osc_handler	14	14	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.bell	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._device_status_report	8	8	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._csi_device_identification	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._csi_device_status_report	22	22	0	14	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.set_expanded_mode	16	16	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.reset_expanded_mode	16	16	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.toggle_alternate_screen_buffer	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.toggle_alternate_screen_buffer_cursor	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.expanded_mode_toggle	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.insert_characters	4	4	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.delete_characters	11	11	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._erase_characters	8	8	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_left	16	16	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_right	18	18	0	8	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_up	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_down	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_next_line	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_previous_line	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_horizontal_absolute	9	9	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_position	32	32	0	16	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.cursor_position_vertical	2	2	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_screen	6	6	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_screen_from_cursor_down	6	6	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_screen_from_cursor_up	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_screen_from_cursor	19	19	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_line_from_cursor_right	6	6	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_line_from_cursor_left	6	6	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_line	4	4	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.clear_line_from_cursor	19	19	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.set_led_state	15	15	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._set_rendition	58	58	0	38	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._opt_handler	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._spanify_screen	89	89	0	58	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal._spanify_scrollback	73	73	0	50	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.dump_html	21	21	0	12	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.dump_html_async	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.dump_plain	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.dump_components	7	7	0	2	0	0.0%
openhcs/textual_tui/services/terminal.py	Terminal.dump	10	10	0	6	0	0.0%
openhcs/textual_tui/services/terminal.py	css_renditions	11	11	0	4	0	0.0%
openhcs/textual_tui/services/terminal.py	(no function)	291	291	1	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._generate_256_colors	10	10	0	4	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._setup_csi_handlers	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._setup_esc_handlers	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.parse_enhanced_escape_sequences	31	31	0	20	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._parse_csi_params	8	8	0	6	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.get_enhanced_color	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.parse_color_sequence	56	56	0	48	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.add_callback	3	3	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.remove_callback	2	2	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements.trigger_callbacks	5	5	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._cursor_up	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._cursor_down	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._cursor_right	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._cursor_left	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._cursor_position	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._erase_display	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._erase_line	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._set_rendition	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._set_scroll_region	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._save_cursor	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._restore_cursor	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._reset_mode	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._set_mode	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._reset_terminal	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._index	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._next_line	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._set_tab_stop	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._reverse_index	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._save_cursor_and_attrs	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._restore_cursor_and_attrs	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._application_keypad	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	TerminalEnhancements._normal_keypad	1	1	0	2	0	0.0%
openhcs/textual_tui/services/terminal_enhancements.py	(no function)	24	24	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher.launch_editor_for_file	10	10	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._create_editor_command	3	3	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._create_callback_script	11	11	0	2	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._start_polling	3	3	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._start_polling.poll_for_completion	31	31	0	6	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._create_login_shell_wrapper	10	10	0	0	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._get_user_shell	15	15	0	8	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	TerminalLauncher._launch_terminal_with_command	17	17	0	2	0	0.0%
openhcs/textual_tui/services/terminal_launcher.py	(no function)	14	14	0	0	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationResult.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService.validate_field	17	17	0	16	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_bool	3	3	0	2	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_int	5	5	0	0	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_float	5	5	0	0	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_str	3	3	0	2	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_path	5	5	0	0	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService._validate_enum	6	6	0	2	0	0.0%
openhcs/textual_tui/services/validation_service.py	ValidationService.validate_form	8	8	0	4	0	0.0%
openhcs/textual_tui/services/validation_service.py	(no function)	22	22	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService.show_add_step_dialog	4	4	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService.show_edit_step_dialog	3	3	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._show_dialog	10	10	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_ok	8	8	0	4	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_cancel	2	2	0	2	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_save_and_close	2	2	0	2	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_cancel_and_close	2	2	0	2	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_add_step_ok	2	2	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	VisualProgrammingDialogService._handle_edit_step_ok	2	2	0	0	0	0.0%
openhcs/textual_tui/services/visual_programming_dialog_service.py	(no function)	18	18	0	0	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache._load_cache	10	10	0	2	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache._save_cache	7	7	0	0	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache.save_window_state	6	6	0	0	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache.load_window_state	12	12	0	2	0	0.0%
openhcs/textual_tui/services/window_cache.py	WindowCache.clear_window_cache	11	11	0	4	0	0.0%
openhcs/textual_tui/services/window_cache.py	get_window_cache	3	3	0	2	0	0.0%
openhcs/textual_tui/services/window_cache.py	(no function)	15	15	0	0	0	0.0%
openhcs/textual_tui/services/window_service.py	WindowService.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/services/window_service.py	WindowService.open_file_browser	3	3	0	0	0	0.0%
openhcs/textual_tui/services/window_service.py	WindowService.open_config_window	8	8	0	0	0	0.0%
openhcs/textual_tui/services/window_service.py	WindowService.open_multi_orchestrator_config	2	2	0	0	0	0.0%
openhcs/textual_tui/services/window_service.py	(no function)	11	11	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	setup_subprocess_logging	11	11	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate	165	165	0	32	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.log_thread_count	2	2	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.force_error_detection	11	11	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.death_marker	1	1	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.import_config	3	3	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.import_orchestrator	2	2	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.import_storage_registry	3	3	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.setup_global_context	3	3	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.progress_callback	1	1	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	run_single_plate.monitor_execution	34	34	0	8	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main	72	72	0	6	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main.kill_all_children	12	12	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main.heartbeat_monitor	12	12	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main.crash_handler	12	12	0	2	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main.exit_handler	2	2	0	0	0	0.0%
openhcs/textual_tui/subprocess_runner.py	main.debug_handler	8	8	0	4	0	0.0%
openhcs/textual_tui/subprocess_runner.py	(no function)	14	14	2	0	0	0.0%
openhcs/textual_tui/utils/__init__.py	(no function)	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/__init__.py	(no function)	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonConfig.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList._calculate_content_width	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList._calculate_option_height	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList._update_content_width	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList.render_line	13	13	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	InlineButtonSelectionList.handle_click	16	16	0	12	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.compose	11	11	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.on_mount	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.watch_items	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.watch_selected_item	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.format_item_for_display	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._sanitize_id	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.handle_selected_changed	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.handle_highlight_changed	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.handle_button_pressed	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.get_selection_state	9	9	0	6	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._update_selection_list	28	28	0	6	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._delayed_update_display	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.action_add_item_buttons	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._create_button_rows	34	34	0	12	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._create_single_row	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget.handle_resize	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	ButtonListWidget._update_button_states	12	12	0	4	0	0.0%
openhcs/textual_tui/widgets/button_list_widget.py	(no function)	49	49	0	0	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.__init__	18	18	0	4	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.from_dataclass	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.compose	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget._fix_scroll_position	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget._on_field_change	11	11	0	10	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.on_input_changed	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.on_checkbox_changed	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.on_radio_set_changed	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.on_button_pressed	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget._reset_field	23	23	0	12	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget._sync_field_values	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget._refresh_field_widget	38	38	0	20	0	0.0%
openhcs/textual_tui/widgets/config_form.py	ConfigFormWidget.get_config_values	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/config_form.py	(no function)	24	24	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.on_mount	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.add_window_button	33	33	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.remove_window_button	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.update_window_button_state	15	15	0	2	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	CustomWindowBar.__getattribute__	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/custom_window_bar.py	(no function)	18	18	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	DifferentValuesCheckbox.__init__	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	DifferentValuesCheckbox.on_click	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	DifferentValuesCheckbox.reset_to_different	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	DifferentValuesCheckbox.set_value	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	DifferentValuesCheckbox.current_state	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/different_values_checkbox.py	(no function)	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	DifferentValuesInput.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	DifferentValuesInput.on_click	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	DifferentValuesInput.reset_to_different	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	DifferentValuesInput.set_value	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	DifferentValuesInput.current_state	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/different_values_input.py	(no function)	12	12	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.__init__	12	12	0	2	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet._clear_selection	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.on_click	11	11	0	6	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.reset_to_different	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.set_value	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.current_state	9	9	0	6	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	DifferentValuesRadioSet.selected_enum_value	7	7	0	6	0	0.0%
openhcs/textual_tui/widgets/different_values_radio_set.py	(no function)	14	14	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._apply_different_state	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._setup_click_handler	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._setup_click_handler.wrapped_on_click	6	6	0	6	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._handle_click	8	8	0	6	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._set_widget_value	16	16	0	14	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._remove_different_state	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper.reset_to_different	10	10	0	8	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper.set_value	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper.current_state	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	DifferentValuesWrapper._is_default_value	14	14	0	8	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	create_different_values_widget	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/different_values_wrapper.py	(no function)	16	16	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.__init__	11	11	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget._get_listing_display	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.load_current_directory	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.navigate_to	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.navigate_up	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.get_focused_item	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.can_select_focused	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.on_key	10	10	0	8	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget._handle_selection	8	8	0	8	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget._update_display	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.watch_current_path	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.watch_listing	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	FileListWidget.watch_focused_index	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/file_list.py	(no function)	31	31	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.current_pattern	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.watch_functions	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._initialize_pattern_data	34	34	0	14	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._normalize_function_list	8	8	0	6	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._commit_and_notify	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._trigger_recomposition	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.watch_current_group_by	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._update_pattern_data	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._switch_to_channel	15	15	0	6	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._add_channel_to_pattern	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._remove_current_channel	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.compose	32	32	0	6	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_button_pressed	23	23	0	14	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_function_pane_widget_parameter_changed	33	33	0	18	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_function_pane_widget_change_function	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_function_pane_widget_remove_function	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_function_pane_widget_add_function	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget.on_function_pane_widget_move_function	14	14	0	6	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._add_function	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._add_function_at_index	11	11	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._add_function_at_index.handle_function_selection	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._change_function	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._change_function.handle_function_selection	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._commit_and_notify	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._load_func	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._load_func.handle_result	14	14	0	8	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._save_func_as	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._save_func_as.handle_result	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._load_pattern_from_file	75	75	0	14	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._save_pattern_to_file	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._edit_in_vim	10	10	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._handle_edited_pattern	12	12	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._generate_complete_python_code	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._apply_edited_pattern	25	25	0	14	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._generate_pattern_python_code	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._get_component_button_text	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._get_component_display_name	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._refresh_component_button	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._is_component_button_disabled	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._show_component_selection_dialog	37	37	0	10	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._show_component_selection_dialog.handle_selection	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._update_components	37	37	0	20	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._navigate_channel	13	13	0	4	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	FunctionListEditorWidget._get_current_orchestrator	19	19	0	6	0	0.0%
openhcs/textual_tui/widgets/function_list_editor.py	(no function)	64	64	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.__init__	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.compose	15	15	0	4	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._build_parameter_form	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.on_button_pressed	14	14	0	12	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.on_input_changed	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.on_checkbox_changed	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.on_radio_set_changed	8	8	0	6	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._change_function	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._handle_parameter_change	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._sync_kwargs	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.get_current_kwargs	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._remove_function	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._add_function	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._move_function	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._reset_parameter	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._refresh_field_widget	38	38	0	20	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget._reset_all_parameters	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.ParameterChanged.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.ChangeFunction.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.RemoveFunction.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.AddFunction.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	FunctionPaneWidget.MoveFunction.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/function_pane.py	(no function)	41	41	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.compose	10	10	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.on_mount	4	4	0	4	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.discover_log_files	12	12	0	8	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.add_log_file	11	11	0	4	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.update_log_selector	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.switch_to_log	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.on_button_pressed	12	12	0	12	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.show_search_dialog	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.toggle_tailing	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.start_worker_detection	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	LogMonitorWidget.cleanup	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/log_monitor.py	(no function)	25	25	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent.open_pipeline_editor	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent.open_plate_manager	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	MainContent._get_or_create_shared_window	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/main_content.py	(no function)	15	15	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	get_shared_watcher	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	clear_all_subprocess_logs_from_ui	21	21	0	6	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	LogFileHandler.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	LogFileHandler.on_created	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	HiddenTabsTabbedContent.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	HiddenTabsTabbedContent.compose	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	HiddenTabsTabbedContent._force_hide_tabs	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	HiddenTabsTabbedContent._on_mount	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.post_message	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.on_scan_complete	8	8	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.action_scroll_up	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.action_scroll_home	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.action_scroll_end	7	7	0	6	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.action_page_down	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogLines.action_page_up	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.on_mount	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.watch_tail	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.compose	12	12	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.compose.safe_mount_keys	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	PersistentTailLogView.on_scan_complete	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.__init__	23	23	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.compose	37	37	0	14	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._create_friendly_tab_name	10	10	0	6	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._is_tui_main_log	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.on_mount	13	13	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._enable_persistent_tailing	29	29	0	10	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._mark_tabs_ready	12	12	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._force_hide_tabs_after_activation	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.watch_tabs_ready	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._update_dropdown_from_tabs	64	64	0	16	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.on_tabbed_content_tab_activated	15	15	0	6	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.on_select_changed	14	14	0	6	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.on_button_pressed	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.update_file_paths	22	22	0	8	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.toggle_persistent_tailing	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.scroll_to_bottom_and_tail	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget.on_unmount	11	11	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._start_file_watcher	14	14	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._is_relevant_log_file	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._add_log_file	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._debounced_log_addition	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._process_pending_logs	14	14	0	8	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._show_clear_confirmation	22	22	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._show_clear_confirmation.ClearLogsConfirmationWindow.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._show_clear_confirmation.ClearLogsConfirmationWindow.compose	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._show_clear_confirmation.ClearLogsConfirmationWindow.on_button_pressed	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._show_clear_confirmation.handle_confirmation	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._clear_all_logs_except_tui	22	22	0	4	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	OpenHCSToolongWidget._cleanup_removed_logs	32	32	0	14	0	0.0%
openhcs/textual_tui/widgets/openhcs_toolong_widget.py	(no function)	73	73	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.format_item_for_display	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._is_current_plate_initialized	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._handle_button_press	10	10	0	10	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._handle_selection_change	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._handle_item_moved	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.on_selection_list_selected_changed	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._update_button_states_for_selection	12	12	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.get_selection_state	16	16	0	8	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.watch_current_plate	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._set_pipeline_steps_without_save	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.watch_pipeline_steps	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._save_pipeline_to_plate_storage	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.get_pipeline_for_plate	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.save_pipeline_for_plate	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.clear_pipeline_for_plate	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._invalidate_compilation_status	10	10	0	8	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.watch_selected_step	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._update_button_states	18	18	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_add_step	14	14	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_add_step.handle_result	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_delete_step	19	19	0	8	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._dict_to_function_step	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._function_step_to_dict	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._find_step_index_by_selection	7	7	0	6	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_edit_step	23	23	0	4	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_edit_step.handle_result	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_auto_load_pipeline	23	23	0	6	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_load_pipeline	9	9	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_load_pipeline.handle_result	15	15	0	12	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._load_multiple_pipeline_files	25	25	0	10	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._load_single_pipeline_file	11	11	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._apply_pipeline_to_selected_orchestrators	16	16	0	10	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._load_pipeline_from_file	8	8	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_save_pipeline	14	14	0	4	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_save_pipeline.handle_result	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget._save_pipeline_to_file	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_code_pipeline	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	PipelineEditorWidget.action_code_pipeline.handle_edited_code	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/pipeline_editor.py	(no function)	50	50	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	get_orchestrator_status_symbol	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.__init__	16	16	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.on_unmount	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.format_item_for_display	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._handle_button_press	10	10	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._handle_selection_change	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._handle_item_moved	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.on_mount	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.watch_items	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.watch_highlighted_item	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.watch_selected_plate	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.watch_orchestrator_state_version	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.get_selection_state	30	30	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.get_operation_description	4	4	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._delayed_update_display	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._trigger_ui_refresh	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._update_button_states	34	34	0	6	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._is_any_plate_running	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._has_pipelines	7	7	0	6	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.get_plate_status	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._is_orchestrator_initialized	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._can_orchestrator_be_initialized	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._notify_pipeline_editor_status_change	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._get_current_pipeline_definition	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.get_operation_description	11	11	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._reset_execution_state	23	23	0	12	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_run_plate	18	18	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_log_monitoring	12	12	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._stop_log_monitoring	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._get_current_log_position	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._stop_file_watcher	8	8	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_monitoring	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._stop_monitoring	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._check_process_status_async	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._handle_process_completion	29	29	0	16	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._read_log_file_incremental	22	22	0	10	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._read_log_file_incremental._read_log_content	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq	56	56	0	18	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._connect	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._execute	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._run_plates_zmq._disconnect	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._on_zmq_progress	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution	51	51	0	12	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution._cancel	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution._check_status	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_stop_execution._disconnect	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_add_plate	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_export_ome_zarr	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_export_ome_zarr.handle_export_result	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_ome_zarr_export	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_ome_zarr_export.run_export	33	33	0	12	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._open_plate_directory_browser	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._add_plate_callback	30	30	0	18	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_delete_plate	12	12	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_edit_config	13	13	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_edit_config.handle_config_save	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_edit_global_config	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_edit_global_config.handle_global_config_save	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._analyze_orchestrator_configs	21	21	0	10	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._values_equal	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_init_plate	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_async_init	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._init_plates_worker	32	32	0	10	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._init_plates_worker.init_orchestrator	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_compile_plate	28	28	0	18	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._start_async_compile	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._compile_plates_worker	53	53	0	18	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._compile_plates_worker.get_or_create_orchestrator	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_code_plate	26	26	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_code_plate.handle_edited_code	33	33	0	14	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_save_python_script	27	27	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget.action_save_python_script.handle_save_result	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	PlateManagerWidget._generate_executable_script	19	19	0	0	0	0.0%
openhcs/textual_tui/widgets/plate_manager.py	(no function)	99	99	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogFileHandler.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogFileHandler.on_created	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogFileHandler.on_modified	4	4	0	4	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.compose	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.on_mount	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.on_unmount	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.start_monitoring	15	15	0	8	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.stop_monitoring	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._discover_existing_logs	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._add_log_file	8	8	0	2	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.watch_active_logs	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._update_log_selector	36	36	0	8	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor.on_select_changed	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._show_log_file	23	23	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._sort_logs_for_display	18	18	0	10	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._start_file_watcher	19	19	0	4	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._stop_file_watcher	18	18	0	8	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._handle_log_file_created	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	ReactiveLogMonitor._handle_log_file_modified	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/reactive_log_monitor.py	(no function)	36	36	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/__init__.py	(no function)	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	ClickableHelpLabel.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	ClickableHelpLabel.on_click	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	ClickableFunctionTitle.__init__	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	ClickableParameterLabel.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	HelpIndicator.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	HelpIndicator.on_click	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/clickable_help_label.py	(no function)	13	13	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/enum_radio_set.py	EnumRadioSet.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/enum_radio_set.py	EnumRadioSet.compose	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/shared/enum_radio_set.py	(no function)	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.__init__	16	16	0	2	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.build_form	10	10	0	8	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_regular_parameter_widget	17	17	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_nested_dataclass_widget	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_dataclass_widget	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager._create_optional_regular_widget	10	10	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.create_parameter_widget	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.create_nested_form	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.update_widget_value	4	4	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.get_widget_value	5	5	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.handle_optional_checkbox_change	8	8	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.reset_parameter_by_path	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	ParameterFormManager.convert_string_to_type	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/parameter_form_manager.py	(no function)	25	25	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/textual_widget_strategies.py	create_textual_widget	22	22	0	14	0	0.0%
openhcs/textual_tui/widgets/shared/textual_widget_strategies.py	create_different_values_widget	11	11	0	6	0	0.0%
openhcs/textual_tui/widgets/shared/textual_widget_strategies.py	(no function)	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	TypedWidgetFactory.create_widget	23	23	0	16	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	TypedWidgetFactory.create_different_values_widget	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	TypedWidgetFactory._is_list_of_enums	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	TypedWidgetFactory._get_enum_from_list	7	7	0	2	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	TypedWidgetFactory._create_nested_dataclass_widget	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/shared/typed_widget_factory.py	(no function)	16	16	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuButton.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuButton.on_mouse_down	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuButton.on_mouse_up	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuButton.on_leave	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuButton.show_popup	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown.compose	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown.on_mount	9	9	0	4	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown.on_mouse_up	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown.on_button_static_pressed	14	14	0	12	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_main	11	11	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_config	11	11	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_config.handle_config_save	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_term	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_help	9	9	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_toggle_monitor	10	10	0	2	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._handle_quit	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._propagate_global_config_to_orchestrators	22	22	0	6	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._save_config_to_cache	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	StartMenuDropdown._save_config_to_cache._async_save	8	8	0	2	0	0.0%
openhcs/textual_tui/widgets/start_menu_button.py	(no function)	32	32	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	TUILogHandler.__init__	8	8	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	TUILogHandler.emit	11	11	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	TUILogHandler._flush_pending_messages	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.__init__	10	10	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.get_log_display	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.on_click	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.open_toolong_viewer	12	12	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.watch_current_log_message	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar._update_log_display	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.on_mount	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.on_unmount	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.setup_log_handler	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.cleanup_log_handler	5	5	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.add_log_message	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.get_recent_logs	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.collect_log_files	12	12	0	4	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.start_log_monitoring	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.stop_log_monitoring	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.set_status	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.set_error	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.set_info	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.clear_status	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.start_log_file_monitoring	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.stop_log_file_monitoring	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.get_current_log_file_path	13	13	0	8	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar._log_monitor_worker	25	25	0	14	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar._batch_add_log_messages	7	7	0	4	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.is_subprocess_log	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	StatusBar.extract_log_message	12	12	0	6	0	0.0%
openhcs/textual_tui/widgets/status_bar.py	(no function)	49	49	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.__init__	14	14	0	2	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.compose	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._build_step_parameter_form	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.on_input_changed	6	6	0	4	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.on_checkbox_changed	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.on_radio_set_changed	8	8	0	6	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget.on_button_pressed	7	7	0	6	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._handle_parameter_change	10	10	0	4	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._reset_parameter	10	10	0	2	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._refresh_form_widgets	20	20	0	12	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._load_step	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._load_step.handle_result	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._save_step_as	6	6	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._save_step_as.handle_result	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._load_step_from_file	12	12	0	4	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	StepParameterEditorWidget._save_step_to_file	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/step_parameter_editor.py	(no function)	29	29	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.compose	10	10	0	2	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.on_mount	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.on_unmount	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._start_monitoring	3	3	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._stop_monitoring	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.toggle_monitoring	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.manual_refresh	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._monitor_worker	15	15	0	4	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._update_ui_from_thread	4	4	0	2	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._get_ascii_header	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual.update_display	2	2	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._update_plots	36	36	0	4	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._update_fallback_display	7	7	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._update_system_info	12	12	0	2	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	SystemMonitorTextual._create_bar	4	4	0	0	0	0.0%
openhcs/textual_tui/widgets/system_monitor.py	(no function)	40	40	0	0	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget._sort_paths	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.compose	15	15	0	6	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget._get_friendly_name	12	12	0	8	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.on_select_changed	6	6	0	2	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.on_mount	11	11	0	6	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget._enable_tailing	9	9	0	8	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.on_unmount	0	0	0	0	0	100.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.add_log_file	3	3	0	2	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.remove_log_file	2	2	0	2	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.from_single_file	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	ToolongWidget.from_multiple_files	1	1	0	0	0	0.0%
openhcs/textual_tui/widgets/toolong_widget.py	(no function)	26	26	0	0	0	0.0%
openhcs/textual_tui/windows/__init__.py	(no function)	15	15	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.__init__	11	11	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._get_default_shell	7	7	0	6	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._setup_terminal_callbacks	8	8	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._setup_terminal_callbacks.on_screen_changed	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._setup_terminal_callbacks.on_cursor_changed	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._setup_terminal_callbacks.on_title_changed	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._setup_terminal_callbacks.on_bell	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.on_mount	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.on_unmount	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.start_terminal	11	11	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.stop_terminal	19	19	0	6	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._read_from_terminal	15	15	0	8	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._update_display	7	7	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._update_cursor	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._show_error	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.clear_terminal	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.reset_terminal	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.send_input	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget.on_key	7	7	0	4	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWidget._key_to_bytes	10	10	0	8	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow.__init__	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow._get_current_shell	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow.compose	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow.on_key	8	8	0	6	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow.send_command	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	AdvancedTerminalWindow.on_mount	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/advanced_terminal_window.py	(no function)	42	42	0	0	0	0.0%
openhcs/textual_tui/windows/base_window.py	BaseOpenHCSWindow.__init__	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/base_window.py	BaseOpenHCSWindow.close_window	16	16	0	2	0	0.0%
openhcs/textual_tui/windows/base_window.py	(no function)	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow.__init__	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow.calculate_content_height	8	8	0	4	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow.compose	6	6	0	0	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow._set_initial_focus_without_scroll	6	6	0	2	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow.on_button_pressed	6	6	0	6	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow._handle_save	12	12	0	8	0	0.0%
openhcs/textual_tui/windows/config_window.py	ConfigWindow._handle_reset_to_defaults	7	7	0	6	0	0.0%
openhcs/textual_tui/windows/config_window.py	(no function)	16	16	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	ASTNodeInfo.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	ASTNodeInfo._get_description	25	25	0	16	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	ASTNodeInfo._get_details	14	14	0	8	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	ASTNodeInfo._get_name	10	10	0	8	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DynamicASTAnalyzer.get_inspection_categories	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DynamicASTAnalyzer.analyze_module	12	12	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DynamicASTAnalyzer.analyze_file	10	10	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DynamicASTAnalyzer._build_ast_tree	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.compose	25	25	0	6	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.on_button_pressed	14	14	0	12	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.on_input_submitted	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow.on_tree_node_selected	10	10	0	10	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._expand_node	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._analyze_single_module	29	29	0	2	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._navigate_home	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._navigate_back	21	21	0	10	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._update_navigation_ui	10	10	0	2	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._show_initial_state	16	16	0	4	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._analyze_category	24	24	0	6	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._analyze_custom_module	46	46	0	4	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._show_file_browser	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._populate_ast_tree	11	11	0	8	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._get_node_icon	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	DebugClassExplorerWindow._update_node_details	27	27	0	18	0	0.0%
openhcs/textual_tui/windows/debug_class_explorer.py	(no function)	46	46	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	ButtonTab.ButtonClicked.__init__	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	ButtonTab.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	ButtonTab._on_click	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons._get_content_switcher	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons._safe_switch_content	10	10	0	2	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons.set_callbacks	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons.compose	12	12	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons._on_tabs_tab_activated	9	9	0	6	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons.on_button_tab_button_clicked	4	4	0	4	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	TabbedContentWithButtons.on_resize	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.__init__	12	12	0	2	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.compose	12	12	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_input_changed	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_select_changed	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_button_pressed	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_step_parameter_editor_widget_step_parameter_changed	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.on_function_list_editor_widget_function_pattern_changed	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._update_change_tracking	13	13	0	6	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._validate_function_data	8	8	0	6	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._steps_equal	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._update_status	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow.watch_has_changes	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._handle_save	20	20	0	8	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._validate_and_convert_function_parameters	31	31	0	18	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._sync_ui_to_editing_step	7	7	0	4	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	DualEditorWindow._handle_cancel	6	6	0	4	0	0.0%
openhcs/textual_tui/windows/dual_editor_window.py	(no function)	53	53	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.__init__	19	19	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.compose	30	30	0	12	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_button_pressed	22	22	0	18	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._finish_with_result	10	10	0	6	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._cache_successful_path	15	15	0	8	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_mount	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_directory_selected	10	10	0	6	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_path_input_submitted	19	19	0	8	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_file_selected	12	12	0	8	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_add_to_selection_list	18	18	0	8	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_navigate_to_folder	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_select_file	18	18	0	6	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_folder_edit_submitted	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_folder_edit_blurred	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._finish_folder_editing	25	25	0	6	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_key	9	9	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow.on_checkbox_changed	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._refresh_directory_tree	8	8	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._get_cached_paths	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._cache_paths	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_go_home	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_go_up	6	6	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._navigate_to_path	8	8	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_add_current	33	33	0	14	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_new_folder	19	19	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._start_folder_editing	16	16	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_remove_selected	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_select_all	37	37	0	24	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._handle_save_file	29	29	0	12	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._update_selected_display	29	29	0	4	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._update_path_display	6	6	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._update_filename_from_selection	18	18	0	6	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._ensure_extension	6	6	0	4	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._validate_filename	10	10	0	8	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._file_exists	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._show_overwrite_confirmation	11	11	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._show_overwrite_confirmation.OverwriteConfirmationWindow.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._show_overwrite_confirmation.OverwriteConfirmationWindow.compose	5	5	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._show_overwrite_confirmation.OverwriteConfirmationWindow.on_button_pressed	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._show_overwrite_confirmation.handle_confirmation	3	3	0	2	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	FileBrowserWindow._mount_confirmation	2	2	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	open_file_browser_window	21	21	0	0	0	0.0%
openhcs/textual_tui/windows/file_browser_window.py	(no function)	66	66	0	0	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.__init__	7	7	0	0	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._load_function_data	10	10	0	4	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.compose	12	12	0	0	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._build_function_table	10	10	0	0	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._build_module_tree	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._organize_by_library_and_module	10	10	0	6	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._determine_library	9	9	0	8	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._extract_module_path	25	25	0	8	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._populate_table	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.on_input_changed	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.on_tree_node_selected	19	19	0	6	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.on_data_table_row_selected	14	14	0	4	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow.on_button_pressed	8	8	0	8	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	FunctionSelectorWindow._filter_functions	16	16	0	6	0	0.0%
openhcs/textual_tui/windows/function_selector_window.py	(no function)	23	23	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.__init__	11	11	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._default_colors	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._setup_callbacks	8	8	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_terminal_change	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_cursor_move	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_mode_change	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_title_change	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_bell	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_escape_sequence	15	15	0	10	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._on_osc_sequence	22	22	0	12	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.on_unmount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.start_terminal	25	25	0	6	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._apply_pywal_colors	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.stop_terminal	10	10	0	6	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal._read_pty	13	13	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.resize_terminal	6	6	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.on_resize	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.render_line	40	40	0	34	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.on_key	16	16	0	10	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	GateOneTextualTerminal.on_paste	7	7	0	2	0	0.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	TerminalApp.compose	0	0	1	0	0	100.0%
openhcs/textual_tui/windows/gateone-terminal-widget.py	(no function)	48	48	6	0	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow.__init__	10	10	0	0	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._format_component_display	8	8	0	4	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._extract_channel_from_display	9	9	0	2	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow.compose	16	16	0	2	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._update_lists	13	13	0	4	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow.on_button_pressed	12	12	0	12	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._move_right	13	13	0	8	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._move_left	13	13	0	8	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._select_all	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._select_none	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._handle_ok	3	3	0	2	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	GroupBySelectorWindow._handle_cancel	3	3	0	2	0	0.0%
openhcs/textual_tui/windows/group_by_selector_window.py	(no function)	22	22	0	0	0	0.0%
openhcs/textual_tui/windows/help_window.py	HelpWindow.__init__	3	3	0	0	0	0.0%
openhcs/textual_tui/windows/help_window.py	HelpWindow.compose	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/help_window.py	HelpWindow.on_button_pressed	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/help_window.py	HelpWindow._calculate_dynamic_size	15	15	0	2	0	0.0%
openhcs/textual_tui/windows/help_window.py	(no function)	11	11	0	0	0	0.0%
openhcs/textual_tui/windows/help_windows.py	BaseHelpWindow.close_help	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/help_windows.py	DocstringHelpWindow.__init__	8	8	0	4	0	0.0%
openhcs/textual_tui/windows/help_windows.py	DocstringHelpWindow.compose	18	18	0	12	0	0.0%
openhcs/textual_tui/windows/help_windows.py	DocstringHelpWindow._calculate_dynamic_size	31	31	0	18	0	0.0%
openhcs/textual_tui/windows/help_windows.py	ParameterHelpWindow.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/windows/help_windows.py	ParameterHelpWindow.compose	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/help_windows.py	ParameterHelpWindow._calculate_dynamic_size	26	26	0	10	0	0.0%
openhcs/textual_tui/windows/help_windows.py	ParameterHelpWindow._format_type_info	15	15	0	6	0	0.0%
openhcs/textual_tui/windows/help_windows.py	ParameterHelpWindow._format_single_type	12	12	0	4	0	0.0%
openhcs/textual_tui/windows/help_windows.py	HelpWindowManager.show_docstring_help	9	9	0	0	0	0.0%
openhcs/textual_tui/windows/help_windows.py	HelpWindowManager.show_parameter_help	10	10	0	0	0	0.0%
openhcs/textual_tui/windows/help_windows.py	HelpableWidget.show_function_help	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/help_windows.py	HelpableWidget.show_parameter_help	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/help_windows.py	(no function)	31	31	0	0	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow.__init__	9	9	0	4	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow._analyze_orchestrator_configs	21	21	0	10	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow._values_equal	5	5	0	4	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow.compose	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow.on_button_pressed	4	4	0	4	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow._handle_save	15	15	0	4	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	MultiOrchestratorConfigWindow._handle_save.apply_to_all	2	2	0	2	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	show_multi_orchestrator_config	9	9	0	0	0	0.0%
openhcs/textual_tui/windows/multi_orchestrator_config_window.py	(no function)	18	18	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.__init__	6	6	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.compose	9	9	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.on_mount	4	4	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.on_mount.on_plate_selected	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.show_pipeline_editor	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.show_plate_manager	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	PipelinePlateWindow.show_both	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/pipeline_plate_window.py	(no function)	13	13	0	0	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	_patched_recv	111	111	0	72	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	_patched_open_terminal	13	13	0	6	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.__init__	8	8	0	0	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow._get_current_shell	36	36	0	10	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow._create_environment_wrapper	16	16	0	4	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.compose	5	5	0	2	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.on_key	5	5	0	6	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.send_command	5	5	0	4	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.analyze_terminal_output	20	20	0	14	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.on_mount	4	4	0	2	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	TerminalWindow.on_unmount	6	6	0	2	0	0.0%
openhcs/textual_tui/windows/terminal_window.py	(no function)	41	41	0	2	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow.__init__	8	8	0	4	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow._find_current_tui_log	14	14	0	6	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow._find_session_logs	10	10	0	4	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow._find_all_openhcs_logs	9	9	0	4	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow.compose	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow.on_mount	1	1	0	0	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	ToolongWindow.on_unmount	8	8	0	2	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	clear_toolong_logs	13	13	0	2	0	0.0%
openhcs/textual_tui/windows/toolong_window.py	(no function)	18	18	0	0	0	0.0%
openhcs/ui/shared/__init__.py	(no function)	4	0	0	0	0	100.0%
openhcs/ui/shared/parameter_form_constants.py	(no function)	73	0	0	0	0	100.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.__init__	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.analyze_parameters	21	21	0	10	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService._should_hide_from_ui	16	16	0	8	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.convert_value_to_type	48	48	0	36	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.get_parameter_display_info	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.format_widget_name	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.get_field_path_with_fail_loud	7	7	0	6	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.generate_field_ids_direct	2	2	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.validate_field_path_mapping	7	7	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.should_use_concrete_values	9	9	0	8	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.extract_nested_parameters	11	11	0	6	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService._get_field_value	6	6	0	4	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService._create_parameter_info	12	12	0	6	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService._analyze_nested_dataclass	11	11	0	4	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.get_placeholder_text	2	2	0	0	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.reset_nested_managers	2	2	0	2	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService.get_reset_value_for_parameter	5	5	0	4	0	0.0%
openhcs/ui/shared/parameter_form_service.py	ParameterFormService._get_actual_dataclass_field_default	24	24	0	14	0	0.0%
openhcs/ui/shared/parameter_form_service.py	(no function)	43	0	0	0	0	100.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_optional	4	4	0	2	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_optional_dataclass	6	6	0	4	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.get_optional_inner_type	5	5	0	4	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.get_dataclass_type_for_param	8	8	0	6	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.resolve_union_type	6	6	0	4	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_enum_type	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_list_of_enums	11	11	0	6	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.get_enum_from_list_type	10	10	0	6	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.has_dataclass_fields	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.has_resolve_field_value	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_concrete_dataclass	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.is_lazy_dataclass	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.extract_value_attribute	3	3	0	2	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	ParameterTypeUtils.convert_string_to_bool	1	1	0	0	0	0.0%
openhcs/ui/shared/parameter_type_utils.py	(no function)	33	0	0	0	0	100.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.clone_pattern	3	3	0	2	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.convert_list_to_dict	3	3	0	2	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.convert_dict_to_list	5	5	0	4	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.extract_func_and_kwargs	10	10	0	4	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.validate_pattern_structure	18	18	0	18	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.get_current_functions	5	5	0	4	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.update_pattern_functions	7	7	0	4	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.add_new_key	4	4	0	2	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	PatternDataManager.remove_key	4	4	0	2	0	0.0%
openhcs/ui/shared/pattern_data_manager.py	(no function)	21	0	0	0	0	100.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.load_pattern_from_file	3	3	0	0	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.load_pattern_from_file._sync_load_pattern	14	14	0	6	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.save_pattern_to_file	3	3	0	0	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.save_pattern_to_file._sync_save_pattern	8	8	0	2	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.validate_pattern_file	3	3	0	0	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.validate_pattern_file._sync_validate_file	14	14	0	8	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.get_default_save_path	1	1	0	0	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.ensure_func_extension	4	4	0	2	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.backup_pattern_file	10	10	0	2	0	0.0%
openhcs/ui/shared/pattern_file_service.py	PatternFileService.backup_pattern_file._sync_backup_file	8	8	0	2	0	0.0%
openhcs/ui/shared/pattern_file_service.py	(no function)	13	0	0	0	0	100.0%
openhcs/ui/shared/system_monitor_core.py	is_wsl	1	1	0	0	0	0.0%
openhcs/ui/shared/system_monitor_core.py	get_cpu_freq_mhz	11	11	0	2	0	0.0%
openhcs/ui/shared/system_monitor_core.py	SystemMonitorCore.__init__	13	13	0	2	0	0.0%
openhcs/ui/shared/system_monitor_core.py	SystemMonitorCore.update_metrics	24	24	0	4	0	0.0%
openhcs/ui/shared/system_monitor_core.py	SystemMonitorCore.get_metrics_dict	3	3	0	2	0	0.0%
openhcs/ui/shared/system_monitor_core.py	SystemMonitorCore.get_system_info	11	11	0	4	0	0.0%
openhcs/ui/shared/system_monitor_core.py	SystemMonitorCore.reset_history	12	12	0	2	0	0.0%
openhcs/ui/shared/system_monitor_core.py	(no function)	20	1	0	0	0	95.0%
openhcs/ui/shared/ui_utils.py	format_param_name	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_checkbox_label	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_field_label	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_field_id	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_reset_button_id	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_enum_display	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	format_enum_placeholder	1	1	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	debug_param	2	2	0	0	0	0.0%
openhcs/ui/shared/ui_utils.py	(no function)	11	0	0	0	0	100.0%
openhcs/utils/display_config_factory.py	create_display_config	32	1	0	16	4	89.6%
openhcs/utils/display_config_factory.py	create_display_config.__init__	5	0	0	6	0	100.0%
openhcs/utils/display_config_factory.py	create_napari_display_config	6	0	0	2	1	87.5%
openhcs/utils/display_config_factory.py	create_napari_display_config.get_dimension_mode	10	10	0	6	0	0.0%
openhcs/utils/display_config_factory.py	create_napari_display_config.get_colormap_name	1	1	0	0	0	0.0%
openhcs/utils/display_config_factory.py	create_fiji_display_config	6	0	0	2	1	87.5%
openhcs/utils/display_config_factory.py	create_fiji_display_config.get_dimension_mode	11	11	0	6	0	0.0%
openhcs/utils/display_config_factory.py	create_fiji_display_config.get_lut_name	1	1	0	0	0	0.0%
openhcs/utils/display_config_factory.py	(no function)	6	0	0	0	0	100.0%
openhcs/utils/enum_factory.py	_get_colormap_cache_manager	11	11	0	2	0	0.0%
openhcs/utils/enum_factory.py	_get_colormap_cache_manager.get_version	5	5	0	0	0	0.0%
openhcs/utils/enum_factory.py	_get_colormap_cache_manager.serialize_enum_members	1	1	0	0	0	0.0%
openhcs/utils/enum_factory.py	_get_colormap_cache_manager.deserialize_enum_members	1	1	0	0	0	0.0%
openhcs/utils/enum_factory.py	get_available_colormaps	13	13	0	2	0	0.0%
openhcs/utils/enum_factory.py	create_colormap_enum	37	20	0	18	7	47.3%
openhcs/utils/enum_factory.py	create_enum_from_source	18	18	0	12	0	0.0%
openhcs/utils/enum_factory.py	(no function)	10	0	0	0	0	100.0%
openhcs/utils/environment.py	is_headless_mode	8	8	0	4	0	0.0%
openhcs/utils/environment.py	(no function)	2	0	0	0	0	100.0%
openhcs/utils/import_utils.py	optional_import	4	0	0	0	0	100.0%
openhcs/utils/import_utils.py	create_placeholder_class	11	3	0	2	1	69.2%
openhcs/utils/import_utils.py	(no function)	4	0	0	0	0	100.0%
openhcs/validation/__init__.py	(no function)	2	2	0	0	0	0.0%
openhcs/validation/ast_validator.py	ValidationViolation.__init__	5	5	0	0	0	0.0%
openhcs/validation/ast_validator.py	ValidationViolation.__str__	1	1	0	0	0	0.0%
openhcs/validation/ast_validator.py	ASTValidator.__init__	3	3	0	0	0	0.0%
openhcs/validation/ast_validator.py	ASTValidator.add_violation	1	1	0	0	0	0.0%
openhcs/validation/ast_validator.py	ASTValidator.visit_FunctionDef	4	4	0	0	0	0.0%
openhcs/validation/ast_validator.py	PathTypeValidator.visit_FunctionDef	24	24	0	24	0	0.0%
openhcs/validation/ast_validator.py	BackendParameterValidator.visit_Call	13	13	0	10	0	0.0%
openhcs/validation/ast_validator.py	VFSBoundaryValidator.__init__	4	4	0	0	0	0.0%
openhcs/validation/ast_validator.py	VFSBoundaryValidator.visit_ImportFrom	5	5	0	4	0	0.0%
openhcs/validation/ast_validator.py	VFSBoundaryValidator.visit_Import	6	6	0	6	0	0.0%
openhcs/validation/ast_validator.py	VFSBoundaryValidator.visit_Call	7	7	0	6	0	0.0%
openhcs/validation/ast_validator.py	MemoryTypeValidator.visit_FunctionDef	13	13	0	10	0	0.0%
openhcs/validation/ast_validator.py	validate_path_types	3	3	0	0	0	0.0%
openhcs/validation/ast_validator.py	validate_path_types.decorator	3	3	0	0	0	0.0%
openhcs/validation/ast_validator.py	validate_path_types.decorator.wrapper	1	1	0	0	0	0.0%
openhcs/validation/ast_validator.py	validate_backend_parameter	4	4	0	0	0	0.0%
openhcs/validation/ast_validator.py	validate_backend_parameter.wrapper	1	1	0	0	0	0.0%
openhcs/validation/ast_validator.py	validate_file	12	12	0	2	0	0.0%
openhcs/validation/ast_validator.py	(no function)	34	34	0	0	0	0.0%
openhcs/validation/validate.py	find_python_files	17	17	0	10	0	0.0%
openhcs/validation/validate.py	validate_directory	6	6	0	2	0	0.0%
openhcs/validation/validate.py	main	37	37	0	22	0	0.0%
openhcs/validation/validate.py	(no function)	8	8	2	0	0	0.0%
Total		51344	40876	749	15920	919	18.9%

No items found using the specified filter.